Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNU6-337P-201ENST00000391243 106 ntBASIC4.14□□□□□ -1.75
SENP3Q9H4L4 HMGN2P23-201ENST00000456759 269 ntBASIC4.14□□□□□ -1.75
SENP3Q9H4L4 RNA5SP148-201ENST00000516527 94 ntBASIC4.14□□□□□ -1.75
SENP3Q9H4L4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC4.14□□□□□ -1.75
SENP3Q9H4L4 MIR4317-201ENST00000637586 65 ntBASIC4.14□□□□□ -1.75
SENP3Q9H4L4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SENP3Q9H4L4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SENP3Q9H4L4 MIR512-1-201ENST00000384913 84 ntBASIC4.13□□□□□ -1.75
SENP3Q9H4L4 RNU6-530P-201ENST00000391180 107 ntBASIC4.13□□□□□ -1.75
SENP3Q9H4L4 MIR6817-201ENST00000615588 66 ntBASIC4.13□□□□□ -1.75
SENP3Q9H4L4 AL162376.1-201ENST00000624117 175 ntBASIC4.13□□□□□ -1.75
SENP3Q9H4L4 SNORD1A-201ENST00000364968 72 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 MIR1827-201ENST00000408549 66 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 AC006210.1-201ENST00000424882 111 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 RNU1-143P-201ENST00000516296 146 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 U1.23-201ENST00000610293 146 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 RNU1-68P-201ENST00000615382 146 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 U1.39-201ENST00000621562 146 ntBASIC4.12□□□□□ -1.75
SENP3Q9H4L4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SENP3Q9H4L4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SENP3Q9H4L4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SENP3Q9H4L4 MIR302D-201ENST00000362275 68 ntBASIC4.11□□□□□ -1.75
SENP3Q9H4L4 RNA5SP68-201ENST00000363885 119 ntBASIC4.11□□□□□ -1.75
SENP3Q9H4L4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SENP3Q9H4L4 RNA5SP458-201ENST00000516188 119 ntBASIC4.11□□□□□ -1.75
SENP3Q9H4L4 AC025627.3-201ENST00000582078 182 ntBASIC4.11□□□□□ -1.75
SENP3Q9H4L4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SENP3Q9H4L4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SENP3Q9H4L4 5S_rRNA.2-201ENST00000391293 112 ntBASIC4.1□□□□□ -1.75
SENP3Q9H4L4 SUMO1P4-201ENST00000429430 302 ntBASIC4.09□□□□□ -1.75
SENP3Q9H4L4 RNU7-90P-201ENST00000459216 62 ntBASIC4.09□□□□□ -1.75
SENP3Q9H4L4 RNU6-1223P-201ENST00000517124 104 ntBASIC4.09□□□□□ -1.75
SENP3Q9H4L4 SNORD56.5-201ENST00000364281 72 ntBASIC4.08□□□□□ -1.76
SENP3Q9H4L4 HMGN1P18-201ENST00000457642 277 ntBASIC4.08□□□□□ -1.76
SENP3Q9H4L4 AL512310.8-201ENST00000550183 120 ntBASIC4.08□□□□□ -1.76
SENP3Q9H4L4 RNA5SP289-201ENST00000362332 137 ntBASIC4.07□□□□□ -1.76
SENP3Q9H4L4 Z98941.1-201ENST00000407764 100 ntBASIC4.06□□□□□ -1.76
SENP3Q9H4L4 SNORD110-201ENST00000408189 75 ntBASIC4.06□□□□□ -1.76
SENP3Q9H4L4 MIR6773-201ENST00000612812 74 ntBASIC4.06□□□□□ -1.76
SENP3Q9H4L4 AL353997.5-201ENST00000618886 171 ntBASIC4.06□□□□□ -1.76
SENP3Q9H4L4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC4.06□□□□□ -1.76
SENP3Q9H4L4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
SENP3Q9H4L4 AL138827.1-201ENST00000402666 306 ntBASIC4.05□□□□□ -1.76
SENP3Q9H4L4 snoU13.9-201ENST00000458927 103 ntBASIC4.05□□□□□ -1.76
SENP3Q9H4L4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SENP3Q9H4L4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SENP3Q9H4L4 RNU6-859P-201ENST00000362728 107 ntBASIC4.04□□□□□ -1.76
SENP3Q9H4L4 MIR1287-201ENST00000408492 90 ntBASIC4.04□□□□□ -1.76
SENP3Q9H4L4 U7.7-201ENST00000459276 60 ntBASIC4.04□□□□□ -1.76
SENP3Q9H4L4 SCARNA16.5-201ENST00000517114 183 ntBASIC4.04□□□□□ -1.76
SENP3Q9H4L4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SENP3Q9H4L4 MIR423-201ENST00000362201 94 ntBASIC4.03□□□□□ -1.76
SENP3Q9H4L4 SNORD33-201ENST00000362761 85 ntBASIC4.03□□□□□ -1.76
SENP3Q9H4L4 SNORA80D-201ENST00000384488 135 ntBASIC4.03□□□□□ -1.76
SENP3Q9H4L4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SENP3Q9H4L4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SENP3Q9H4L4 AC046143.2-201ENST00000609789 160 ntBASIC4.02□□□□□ -1.77
SENP3Q9H4L4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SENP3Q9H4L4 SNORA9.2-201ENST00000365361 133 ntBASIC4.01□□□□□ -1.77
SENP3Q9H4L4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC4.01□□□□□ -1.77
SENP3Q9H4L4 AL354695.1-201ENST00000427935 228 ntBASIC4.01□□□□□ -1.77
SENP3Q9H4L4 AC244090.1-201ENST00000441884 93 ntBASIC4□□□□□ -1.77
SENP3Q9H4L4 RN7SL330P-201ENST00000469709 307 ntBASIC4□□□□□ -1.77
SENP3Q9H4L4 MIR4644-201ENST00000579929 84 ntBASIC4□□□□□ -1.77
SENP3Q9H4L4 TP73-AS1.1-201ENST00000611447 161 ntBASIC4□□□□□ -1.77
SENP3Q9H4L4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SENP3Q9H4L4 MIR27B-201ENST00000385129 97 ntBASIC3.99□□□□□ -1.77
SENP3Q9H4L4 RN7SKP88-201ENST00000516847 250 ntBASIC3.99□□□□□ -1.77
SENP3Q9H4L4 7SK.8-201ENST00000612110 250 ntBASIC3.99□□□□□ -1.77
SENP3Q9H4L4 7SK.13-201ENST00000622040 250 ntBASIC3.99□□□□□ -1.77
SENP3Q9H4L4 AC244205.2-202ENST00000635781 342 ntBASIC3.99□□□□□ -1.77
SENP3Q9H4L4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SENP3Q9H4L4 SNORD63.2-201ENST00000516303 64 ntBASIC3.98□□□□□ -1.77
SENP3Q9H4L4 RNU1-92P-201ENST00000517017 135 ntBASIC3.98□□□□□ -1.77
SENP3Q9H4L4 MIR6507-201ENST00000613630 70 ntBASIC3.98□□□□□ -1.77
SENP3Q9H4L4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SENP3Q9H4L4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SENP3Q9H4L4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SENP3Q9H4L4 RNU6-851P-201ENST00000384565 107 ntBASIC3.97□□□□□ -1.77
SENP3Q9H4L4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SENP3Q9H4L4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.77
SENP3Q9H4L4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SENP3Q9H4L4 MIR20A-201ENST00000362279 71 ntBASIC3.96□□□□□ -1.78
SENP3Q9H4L4 RNU6-1047P-201ENST00000364418 107 ntBASIC3.96□□□□□ -1.78
SENP3Q9H4L4 RNA5SP217-201ENST00000515959 91 ntBASIC3.96□□□□□ -1.78
SENP3Q9H4L4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC3.96□□□□□ -1.78
SENP3Q9H4L4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SENP3Q9H4L4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SENP3Q9H4L4 MIR3678-201ENST00000578455 94 ntBASIC3.95□□□□□ -1.78
SENP3Q9H4L4 RNU6-910P-201ENST00000390844 107 ntBASIC3.94□□□□□ -1.78
SENP3Q9H4L4 MIR4648-201ENST00000580107 72 ntBASIC3.94□□□□□ -1.78
SENP3Q9H4L4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SENP3Q9H4L4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.93□□□□□ -1.78
SENP3Q9H4L4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
SENP3Q9H4L4 RNY1P8-201ENST00000383970 114 ntBASIC3.93□□□□□ -1.78
SENP3Q9H4L4 U7.8-201ENST00000619968 63 ntBASIC3.93□□□□□ -1.78
SENP3Q9H4L4 MTRNR2L9-201ENST00000622562 75 ntBASIC3.93□□□□□ -1.78
SENP3Q9H4L4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SENP3Q9H4L4 SNORD56.3-201ENST00000363507 71 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms