Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC027335.2-201ENST00000624030 375 ntBASIC1.37□□□□□ -2.19
NKX3-2P78367 RNU6-939P-201ENST00000384634 107 ntBASIC1.36□□□□□ -2.19
NKX3-2P78367 MIR100-201ENST00000385259 80 ntBASIC1.36□□□□□ -2.19
NKX3-2P78367 Y_RNA.607-201ENST00000410597 98 ntBASIC1.36□□□□□ -2.19
NKX3-2P78367 RNU6-977P-201ENST00000516411 103 ntBASIC1.36□□□□□ -2.19
NKX3-2P78367 RNU6-638P-201ENST00000516582 104 ntBASIC1.36□□□□□ -2.19
NKX3-2P78367 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.36□□□□□ -2.19
NKX3-2P78367 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
NKX3-2P78367 RNA5SP245-201ENST00000364239 121 ntBASIC1.35□□□□□ -2.19
NKX3-2P78367 MIR1236-201ENST00000408340 102 ntBASIC1.35□□□□□ -2.19
NKX3-2P78367 RNU6-955P-201ENST00000410497 104 ntBASIC1.35□□□□□ -2.19
NKX3-2P78367 RNU7-56P-201ENST00000458744 62 ntBASIC1.35□□□□□ -2.19
NKX3-2P78367 RNU7-10P-201ENST00000607194 63 ntBASIC1.35□□□□□ -2.19
NKX3-2P78367 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
NKX3-2P78367 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
NKX3-2P78367 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
NKX3-2P78367 MIR1-1-201ENST00000362147 71 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 SNORA25.8-201ENST00000364831 128 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 RNU6-132P-201ENST00000383863 107 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 SNORA25-201ENST00000384384 134 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 RNU6-291P-201ENST00000384720 107 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 MIR520E-201ENST00000384867 87 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 MIR519A1-201ENST00000385257 85 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 RNA5SP292-201ENST00000390974 118 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 SNORD12-201ENST00000391002 90 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 RNU6-466P-201ENST00000391224 103 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 AL606490.4-201ENST00000423117 127 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 Y_RNA.809-201ENST00000516058 95 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 RNU6-65P-201ENST00000516332 98 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 AC140658.3-201ENST00000567603 271 ntBASIC1.34□□□□□ -2.19
NKX3-2P78367 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.34□□□□□ -2.19
NKX3-2P78367 SNORD115-37-201ENST00000363768 82 ntBASIC1.33□□□□□ -2.2
NKX3-2P78367 Y_RNA.316-201ENST00000365118 111 ntBASIC1.33□□□□□ -2.2
NKX3-2P78367 RNU6-535P-201ENST00000384722 107 ntBASIC1.33□□□□□ -2.2
NKX3-2P78367 RNU6-1260P-201ENST00000362944 107 ntBASIC1.32□□□□□ -2.2
NKX3-2P78367 SNORD26-201ENST00000384147 75 ntBASIC1.32□□□□□ -2.2
NKX3-2P78367 MIR520F-201ENST00000384824 87 ntBASIC1.32□□□□□ -2.2
NKX3-2P78367 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.32□□□□□ -2.2
NKX3-2P78367 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.32□□□□□ -2.2
NKX3-2P78367 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.32□□□□□ -2.2
NKX3-2P78367 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
NKX3-2P78367 MIRLET7F1-201ENST00000362202 87 ntBASIC1.31□□□□□ -2.2
NKX3-2P78367 RNU6-811P-201ENST00000384069 107 ntBASIC1.31□□□□□ -2.2
NKX3-2P78367 RNU1-119P-201ENST00000391122 165 ntBASIC1.31□□□□□ -2.2
NKX3-2P78367 MIR1827-201ENST00000408549 66 ntBASIC1.31□□□□□ -2.2
NKX3-2P78367 SNORA25.13-201ENST00000516395 103 ntBASIC1.31□□□□□ -2.2
NKX3-2P78367 AL078603.1-201ENST00000603824 313 ntBASIC1.31□□□□□ -2.2
NKX3-2P78367 AC097635.1-201ENST00000450678 155 ntBASIC1.3□□□□□ -2.2
NKX3-2P78367 AC019288.1-201ENST00000557918 224 ntBASIC1.3□□□□□ -2.2
NKX3-2P78367 AC138907.6-201ENST00000568401 126 ntBASIC1.3□□□□□ -2.2
NKX3-2P78367 AC138869.1-201ENST00000568623 124 ntBASIC1.3□□□□□ -2.2
NKX3-2P78367 MIR3064-201ENST00000581130 66 ntBASIC1.3□□□□□ -2.2
NKX3-2P78367 TRDV1-202ENST00000621643 102 ntBASIC1.3□□□□□ -2.2
NKX3-2P78367 MIR599-201ENST00000385069 95 ntBASIC1.29□□□□□ -2.2
NKX3-2P78367 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
NKX3-2P78367 RNU6-279P-201ENST00000391297 101 ntBASIC1.29□□□□□ -2.2
NKX3-2P78367 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.29□□□□□ -2.2
NKX3-2P78367 AC067940.1-201ENST00000458411 300 ntBASIC1.29□□□□□ -2.2
NKX3-2P78367 SNORA18.5-201ENST00000516616 101 ntBASIC1.29□□□□□ -2.2
NKX3-2P78367 MIR4796-201ENST00000580742 81 ntBASIC1.29□□□□□ -2.2
NKX3-2P78367 AC104996.3-201ENST00000590718 94 ntBASIC1.29□□□□□ -2.2
NKX3-2P78367 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
NKX3-2P78367 Y_RNA.94-201ENST00000363068 106 ntBASIC1.28□□□□□ -2.2
NKX3-2P78367 RNU6-857P-201ENST00000515893 110 ntBASIC1.28□□□□□ -2.2
NKX3-2P78367 MIR6788-201ENST00000618842 66 ntBASIC1.28□□□□□ -2.2
NKX3-2P78367 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
NKX3-2P78367 Y_RNA.32-201ENST00000362589 110 ntBASIC1.27□□□□□ -2.21
NKX3-2P78367 SNORD89-201ENST00000390981 114 ntBASIC1.27□□□□□ -2.21
NKX3-2P78367 SNORA31.14-201ENST00000516728 116 ntBASIC1.27□□□□□ -2.21
NKX3-2P78367 MIR4295-201ENST00000585286 85 ntBASIC1.27□□□□□ -2.21
NKX3-2P78367 U6.100-201ENST00000636230 99 ntBASIC1.27□□□□□ -2.21
NKX3-2P78367 SNORD114-27-201ENST00000363766 70 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 Y_RNA.221-201ENST00000364248 96 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 Y_RNA.491-201ENST00000384417 107 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 MIR520H-201ENST00000385126 88 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 SNORD90-201ENST00000391145 111 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 AL450471.1-201ENST00000447509 127 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 RPS29P1-201ENST00000465274 159 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 AC087343.1-201ENST00000477341 475 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 RNU6-1223P-201ENST00000517124 104 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 uc_338.16-201ENST00000621804 95 ntBASIC1.26□□□□□ -2.21
NKX3-2P78367 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
NKX3-2P78367 MIR373-201ENST00000362273 69 ntBASIC1.25□□□□□ -2.21
NKX3-2P78367 RNU6-478P-201ENST00000363904 110 ntBASIC1.25□□□□□ -2.21
NKX3-2P78367 Y_RNA.244-201ENST00000364484 109 ntBASIC1.25□□□□□ -2.21
NKX3-2P78367 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
NKX3-2P78367 SNORD124-201ENST00000459577 104 ntBASIC1.25□□□□□ -2.21
NKX3-2P78367 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.25□□□□□ -2.21
NKX3-2P78367 MIR151B-201ENST00000584249 96 ntBASIC1.25□□□□□ -2.21
NKX3-2P78367 RNU6-624P-201ENST00000363411 107 ntBASIC1.24□□□□□ -2.21
NKX3-2P78367 MIR19B1-201ENST00000384829 87 ntBASIC1.24□□□□□ -2.21
NKX3-2P78367 MIR548U-201ENST00000390728 81 ntBASIC1.24□□□□□ -2.21
NKX3-2P78367 MIR548J-201ENST00000408833 112 ntBASIC1.24□□□□□ -2.21
NKX3-2P78367 AC244505.6-201ENST00000452829 130 ntBASIC1.24□□□□□ -2.21
NKX3-2P78367 MIR4712-201ENST00000583750 82 ntBASIC1.24□□□□□ -2.21
NKX3-2P78367 MIR6734-201ENST00000621166 68 ntBASIC1.24□□□□□ -2.21
NKX3-2P78367 MIR618-201ENST00000385287 98 ntBASIC1.23□□□□□ -2.21
NKX3-2P78367 MIR4696-201ENST00000581431 70 ntBASIC1.23□□□□□ -2.21
NKX3-2P78367 RNU6-664P-201ENST00000362381 107 ntBASIC1.22□□□□□ -2.21
NKX3-2P78367 RNU6-24P-201ENST00000384440 107 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 247.9 ms