Protein–RNA interactions for Protein: A0A0C4DH34

IGHV4-28, Immunoglobulin heavy variable 4-28, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV4-28A0A0C4DH34 RNA5SP47-201ENST00000517230 109 ntBASIC0.59□□□□□ -2.31
IGHV4-28A0A0C4DH34 RNU7-161P-201ENST00000517289 62 ntBASIC0.59□□□□□ -2.31
IGHV4-28A0A0C4DH34 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.59□□□□□ -2.31
IGHV4-28A0A0C4DH34 SNORA36.1-201ENST00000363424 132 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU7-104P-201ENST00000459398 79 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-351P-201ENST00000516097 100 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 CYP3A137P-201ENST00000562436 69 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 AL513043.2-201ENST00000573941 143 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR4653-201ENST00000585107 83 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 AP001318.4-201ENST00000616637 121 ntBASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.58□□□□□ -2.32
IGHV4-28A0A0C4DH34 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-42P-201ENST00000384165 107 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 Y_RNA.508-201ENST00000384502 114 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 AL606490.4-201ENST00000423117 127 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 AL161932.1-201ENST00000437408 146 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 SCARNA16.5-201ENST00000517114 183 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 AL590095.2-201ENST00000604136 117 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 AC092634.7-201ENST00000621022 103 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR6866-201ENST00000638146 69 ntBASIC0.57□□□□□ -2.32
IGHV4-28A0A0C4DH34 Y_RNA.96-201ENST00000363092 109 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNA5SP403-201ENST00000363598 108 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNA5SP517-201ENST00000364724 117 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 Y_RNA.355-201ENST00000365462 98 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-972P-201ENST00000391208 107 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-887P-201ENST00000410660 100 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 MTATP8P2-201ENST00000435212 202 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-162P-201ENST00000516228 103 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-158P-201ENST00000517104 100 ntBASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.56□□□□□ -2.32
IGHV4-28A0A0C4DH34 Y_RNA.118-201ENST00000363300 101 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-957P-201ENST00000363652 99 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-716P-201ENST00000365621 103 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-945P-201ENST00000383947 107 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-466P-201ENST00000391224 103 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR548L-201ENST00000408303 86 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 snoU13.11-201ENST00000459219 104 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNA5SP227-201ENST00000516184 113 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-168P-201ENST00000516189 101 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 SNORA40.13-201ENST00000516379 120 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNA5SP268-201ENST00000516828 124 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-1223P-201ENST00000517124 104 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 SNORA25.18-201ENST00000607153 114 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 TRDV1-202ENST00000621643 102 ntBASIC0.55□□□□□ -2.32
IGHV4-28A0A0C4DH34 Y_RNA.348-201ENST00000365403 103 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 SNORA8.2-201ENST00000384372 139 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 snoU13.18-201ENST00000459483 104 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU6-1265P-201ENST00000516342 103 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 U7.3-201ENST00000616123 62 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR6835-201ENST00000621552 64 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 AC067863.3-201ENST00000624172 122 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR2052-201ENST00000636055 55 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR6828-201ENST00000636181 60 ntBASIC0.54□□□□□ -2.32
IGHV4-28A0A0C4DH34 SNORD58A-201ENST00000383875 65 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR508-201ENST00000384857 115 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR146A-201ENST00000385201 99 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 RNA5SP89-201ENST00000410300 108 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 Y_RNA.648-201ENST00000459455 110 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 Y_RNA.677-201ENST00000516401 85 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 MIR7107-201ENST00000611489 80 ntBASIC0.53□□□□□ -2.32
IGHV4-28A0A0C4DH34 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.53□□□□□ -2.33
IGHV4-28A0A0C4DH34 Y_RNA.283-201ENST00000364798 112 ntBASIC0.52□□□□□ -2.33
IGHV4-28A0A0C4DH34 SNORA40.8-201ENST00000411034 126 ntBASIC0.52□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU7-13P-201ENST00000516413 62 ntBASIC0.52□□□□□ -2.33
IGHV4-28A0A0C4DH34 MIR5000-201ENST00000577717 103 ntBASIC0.52□□□□□ -2.33
IGHV4-28A0A0C4DH34 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU6-640P-201ENST00000363693 105 ntBASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU6-726P-201ENST00000364680 107 ntBASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 Y_RNA.290-201ENST00000364879 114 ntBASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU6-905P-201ENST00000384434 107 ntBASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 SNORD71-201ENST00000411292 86 ntBASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 MIR4714-201ENST00000580728 77 ntBASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 U6.100-201ENST00000636230 99 ntBASIC0.51□□□□□ -2.33
IGHV4-28A0A0C4DH34 SNORD116-10-201ENST00000363791 102 ntBASIC0.5□□□□□ -2.33
IGHV4-28A0A0C4DH34 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.5□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU7-85P-201ENST00000458851 63 ntBASIC0.5□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU4-54P-201ENST00000516428 129 ntBASIC0.5□□□□□ -2.33
IGHV4-28A0A0C4DH34 AC018659.1-201ENST00000551083 169 ntBASIC0.5□□□□□ -2.33
IGHV4-28A0A0C4DH34 AC022709.1-201ENST00000615967 87 ntBASIC0.5□□□□□ -2.33
IGHV4-28A0A0C4DH34 SNORD118-201ENST00000363593 134 ntBASIC0.49□□□□□ -2.33
IGHV4-28A0A0C4DH34 MIR518A1-201ENST00000385068 85 ntBASIC0.49□□□□□ -2.33
IGHV4-28A0A0C4DH34 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.49□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNA5SP121-201ENST00000516537 101 ntBASIC0.49□□□□□ -2.33
IGHV4-28A0A0C4DH34 MIR3920-201ENST00000581751 86 ntBASIC0.49□□□□□ -2.33
IGHV4-28A0A0C4DH34 Y_RNA.190-201ENST00000363964 101 ntBASIC0.48□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU6-519P-201ENST00000410590 108 ntBASIC0.48□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU6-65P-201ENST00000516332 98 ntBASIC0.48□□□□□ -2.33
IGHV4-28A0A0C4DH34 MIR4536-1-201ENST00000583537 88 ntBASIC0.48□□□□□ -2.33
IGHV4-28A0A0C4DH34 MALAT1.1-201ENST00000618249 95 ntBASIC0.48□□□□□ -2.33
IGHV4-28A0A0C4DH34 MIR6515-201ENST00000619843 57 ntBASIC0.48□□□□□ -2.33
IGHV4-28A0A0C4DH34 MIR488-201ENST00000365739 83 ntBASIC0.47□□□□□ -2.33
IGHV4-28A0A0C4DH34 SNORD41.1-201ENST00000391000 69 ntBASIC0.47□□□□□ -2.33
IGHV4-28A0A0C4DH34 Y_RNA.596-201ENST00000410462 109 ntBASIC0.47□□□□□ -2.33
IGHV4-28A0A0C4DH34 RNU6-75P-201ENST00000515944 104 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms