Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU7-188P-201ENST00000517063 64 ntBASIC-0.71□□□□□ -2.52
CCDC43Q96MW1 MIR4263-201ENST00000584745 83 ntBASIC-0.71□□□□□ -2.52
CCDC43Q96MW1 uc_338.10-201ENST00000621872 182 ntBASIC-0.71□□□□□ -2.52
CCDC43Q96MW1 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.72□□□□□ -2.52
CCDC43Q96MW1 SNORD95.1-201ENST00000364099 68 ntBASIC-0.72□□□□□ -2.52
CCDC43Q96MW1 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.72□□□□□ -2.52
CCDC43Q96MW1 RNY4P3-201ENST00000365254 95 ntBASIC-0.72□□□□□ -2.52
CCDC43Q96MW1 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.72□□□□□ -2.52
CCDC43Q96MW1 RNU6-850P-201ENST00000516934 103 ntBASIC-0.72□□□□□ -2.52
CCDC43Q96MW1 YWHAEP2-201ENST00000580066 112 ntBASIC-0.72□□□□□ -2.52
CCDC43Q96MW1 RNU6-312P-201ENST00000364629 107 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 RNA5SP205-201ENST00000364653 136 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 MIR516A2-201ENST00000384888 90 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 MIR181B2-201ENST00000385004 89 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 MIR516A1-201ENST00000385033 90 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 MIR519E-201ENST00000385075 84 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.604-201ENST00000410574 102 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 RNU4-71P-201ENST00000516258 113 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 RNA5SP476-201ENST00000516613 103 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 RNY4P20-201ENST00000516678 93 ntBASIC-0.73□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 RNU6-47P-201ENST00000383866 107 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.459-201ENST00000384251 102 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 MIR34C-201ENST00000384831 77 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 MIR3646-201ENST00000578301 84 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 AC096720.1-201ENST00000604441 183 ntBASIC-0.74□□□□□ -2.53
CCDC43Q96MW1 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 RNU4-63P-201ENST00000411313 118 ntBASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 MIR3681-201ENST00000580089 72 ntBASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 AL590491.3-201ENST00000610731 82 ntBASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 AL137067.1-201ENST00000615933 120 ntBASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 AC069503.3-201ENST00000618674 145 ntBASIC-0.75□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.60-201ENST00000362831 98 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.478-201ENST00000384358 107 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 RNU6-30P-201ENST00000384561 107 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 MIR617-201ENST00000385030 97 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 AC093423.1-201ENST00000440817 142 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 snoU13.11-201ENST00000459219 104 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 MIR3128-201ENST00000581957 66 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 AC108081.1-201ENST00000604358 221 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 FTX_2.1-201ENST00000618816 94 ntBASIC-0.76□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.350-201ENST00000365409 98 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 MIR196A2-201ENST00000385189 110 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 HAR1A.1-201ENST00000459583 118 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 RNU6-1219P-201ENST00000516143 112 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 AC087741.2-201ENST00000619415 172 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 MIR3658-201ENST00000636291 56 ntBASIC-0.77□□□□□ -2.53
CCDC43Q96MW1 SNORD37.2-201ENST00000391075 66 ntBASIC-0.78□□□□□ -2.53
CCDC43Q96MW1 AL603914.1-201ENST00000401964 204 ntBASIC-0.78□□□□□ -2.53
CCDC43Q96MW1 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.78□□□□□ -2.53
CCDC43Q96MW1 RNU7-6P-201ENST00000516845 62 ntBASIC-0.78□□□□□ -2.53
CCDC43Q96MW1 MIR4460-201ENST00000577862 86 ntBASIC-0.78□□□□□ -2.53
CCDC43Q96MW1 SNORD114-11-201ENST00000363738 75 ntBASIC-0.79□□□□□ -2.54
CCDC43Q96MW1 SNORD115-44-201ENST00000365391 82 ntBASIC-0.79□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.680-201ENST00000516441 93 ntBASIC-0.79□□□□□ -2.54
CCDC43Q96MW1 RNU6-111P-201ENST00000517179 105 ntBASIC-0.79□□□□□ -2.54
CCDC43Q96MW1 MIR548AE1-201ENST00000583292 70 ntBASIC-0.79□□□□□ -2.54
CCDC43Q96MW1 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.79□□□□□ -2.54
CCDC43Q96MW1 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.8□□□□□ -2.54
CCDC43Q96MW1 MT-TQ-201ENST00000387372 72 ntBASIC-0.8□□□□□ -2.54
CCDC43Q96MW1 MIR2113-201ENST00000459007 91 ntBASIC-0.8□□□□□ -2.54
CCDC43Q96MW1 RNU6-521P-201ENST00000516663 105 ntBASIC-0.8□□□□□ -2.54
CCDC43Q96MW1 AC022559.1-201ENST00000520905 205 ntBASIC-0.8□□□□□ -2.54
CCDC43Q96MW1 RNU6-239P-201ENST00000390990 99 ntBASIC-0.81□□□□□ -2.54
CCDC43Q96MW1 RNU6-284P-201ENST00000411105 106 ntBASIC-0.81□□□□□ -2.54
CCDC43Q96MW1 RNU6-287P-201ENST00000516230 98 ntBASIC-0.81□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.668-201ENST00000516233 93 ntBASIC-0.81□□□□□ -2.54
CCDC43Q96MW1 RNA5SP67-201ENST00000516422 131 ntBASIC-0.81□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.81□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 RNU4-84P-201ENST00000364200 139 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 SNORA51.5-201ENST00000384126 131 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 RNU6-738P-201ENST00000384531 106 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 AP001328.1-201ENST00000528550 176 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.812-201ENST00000610788 101 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.784-201ENST00000613803 101 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.787-201ENST00000616522 101 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.780-201ENST00000617336 101 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.801-201ENST00000619005 101 ntBASIC-0.82□□□□□ -2.54
CCDC43Q96MW1 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.83□□□□□ -2.54
CCDC43Q96MW1 SNORA20.1-201ENST00000364790 130 ntBASIC-0.83□□□□□ -2.54
CCDC43Q96MW1 SNORD114-29-201ENST00000364819 70 ntBASIC-0.83□□□□□ -2.54
CCDC43Q96MW1 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.83□□□□□ -2.54
CCDC43Q96MW1 MIR568-201ENST00000385036 95 ntBASIC-0.83□□□□□ -2.54
CCDC43Q96MW1 MT-TI-201ENST00000387365 69 ntBASIC-0.83□□□□□ -2.54
CCDC43Q96MW1 AL161932.1-201ENST00000437408 146 ntBASIC-0.83□□□□□ -2.54
CCDC43Q96MW1 RNU6-175P-201ENST00000516896 107 ntBASIC-0.83□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 361.5 ms