Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNA5SP368-201ENST00000364298 116 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 RNY1P5-201ENST00000383890 115 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 MIR34C-201ENST00000384831 77 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 RNA5SP299-201ENST00000391203 116 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 RNA5SP227-201ENST00000516184 113 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 RNA5SP268-201ENST00000516828 124 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 AC244669.1-204ENST00000621564 178 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 AP001362.1-201ENST00000625165 124 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.56-201ENST00000362798 112 ntBASIC0.38□□□□□ -2.35
PDLIM3Q53GG5 SNORD115-24-201ENST00000363528 82 ntBASIC0.38□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.185-201ENST00000363894 100 ntBASIC0.38□□□□□ -2.35
PDLIM3Q53GG5 RNU6-187P-201ENST00000384139 106 ntBASIC0.38□□□□□ -2.35
PDLIM3Q53GG5 MIR518A1-201ENST00000385068 85 ntBASIC0.38□□□□□ -2.35
PDLIM3Q53GG5 RNU6-772P-201ENST00000516042 105 ntBASIC0.38□□□□□ -2.35
PDLIM3Q53GG5 RNA5SP67-201ENST00000516422 131 ntBASIC0.38□□□□□ -2.35
PDLIM3Q53GG5 MIR103A1-201ENST00000362165 78 ntBASIC0.37□□□□□ -2.35
PDLIM3Q53GG5 MIR635-201ENST00000384830 98 ntBASIC0.37□□□□□ -2.35
PDLIM3Q53GG5 MIR548D2-201ENST00000384955 97 ntBASIC0.37□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.586-201ENST00000391146 98 ntBASIC0.37□□□□□ -2.35
PDLIM3Q53GG5 MIR548H5-201ENST00000580314 60 ntBASIC0.37□□□□□ -2.35
PDLIM3Q53GG5 AL512310.12-203ENST00000640543 90 ntBASIC0.37□□□□□ -2.35
PDLIM3Q53GG5 AL157777.2-201ENST00000258070 137 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.127-201ENST00000363386 109 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.221-201ENST00000364248 96 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 SNORD28-201ENST00000384706 75 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 MIR548L-201ENST00000408303 86 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.703-201ENST00000516846 111 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 MTND5P40-201ENST00000559945 246 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 MIR4723-201ENST00000585070 81 ntBASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.36□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.155-201ENST00000363632 101 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.344-201ENST00000365381 112 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 MIR539-201ENST00000365690 78 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 RNU6-1062P-201ENST00000383908 107 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 AC069271.1-201ENST00000445577 156 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 SNRPGP12-201ENST00000449481 213 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 TRAJ51-201ENST00000504127 63 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 IGLVI-20-201ENST00000519296 130 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.35□□□□□ -2.35
PDLIM3Q53GG5 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 SNORD115-19-201ENST00000363098 82 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 SNORD115-18-201ENST00000363293 82 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 SNORD118-201ENST00000363593 134 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 SNORD115-17-201ENST00000364612 82 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.360-201ENST00000365512 102 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 RNA5SP266-201ENST00000410273 108 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 RNU7-104P-201ENST00000459398 79 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 SCARNA16.5-201ENST00000517114 183 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 RNA5SP47-201ENST00000517230 109 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 AC138869.1-201ENST00000568623 124 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 MIR7107-201ENST00000611489 80 ntBASIC0.34□□□□□ -2.36
PDLIM3Q53GG5 RNY4P6-201ENST00000363667 96 ntBASIC0.33□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.346-201ENST00000365385 112 ntBASIC0.33□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.423-201ENST00000384057 113 ntBASIC0.33□□□□□ -2.36
PDLIM3Q53GG5 SPINT5P-201ENST00000448174 155 ntBASIC0.33□□□□□ -2.36
PDLIM3Q53GG5 RNU6-135P-201ENST00000516769 101 ntBASIC0.33□□□□□ -2.36
PDLIM3Q53GG5 MIR4639-201ENST00000584938 69 ntBASIC0.33□□□□□ -2.36
PDLIM3Q53GG5 AC090625.1-201ENST00000357130 210 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 SNORD44.1-201ENST00000363202 61 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 MIR548A1-201ENST00000385041 97 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 MIR599-201ENST00000385069 95 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 RNU7-195P-201ENST00000458793 62 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 MIR4752-201ENST00000579672 72 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 MTRNR2L2-201ENST00000604882 87 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 RNU7-10P-201ENST00000607194 63 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 AC091304.10-201ENST00000641554 121 ntBASIC0.32□□□□□ -2.36
PDLIM3Q53GG5 RNU6-409P-201ENST00000384114 104 ntBASIC0.31□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.507-201ENST00000384500 99 ntBASIC0.31□□□□□ -2.36
PDLIM3Q53GG5 RNU6-816P-201ENST00000390914 107 ntBASIC0.31□□□□□ -2.36
PDLIM3Q53GG5 RNU6-1268P-201ENST00000391214 107 ntBASIC0.31□□□□□ -2.36
PDLIM3Q53GG5 RNU6-1239P-201ENST00000391310 107 ntBASIC0.31□□□□□ -2.36
PDLIM3Q53GG5 SNORD63B-201ENST00000411005 70 ntBASIC0.31□□□□□ -2.36
PDLIM3Q53GG5 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.71-201ENST00000362892 104 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.218-201ENST00000364218 104 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 RNU6-746P-201ENST00000384112 109 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.457-201ENST00000384237 111 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.649-201ENST00000459077 103 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 RNU7-129P-201ENST00000516128 62 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 RNU6-850P-201ENST00000516934 103 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 MIR5190-201ENST00000581537 80 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 MIR6718-201ENST00000616153 80 ntBASIC0.3□□□□□ -2.36
PDLIM3Q53GG5 RNU6-363P-201ENST00000362895 105 ntBASIC0.29□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.362-201ENST00000365518 110 ntBASIC0.29□□□□□ -2.36
PDLIM3Q53GG5 RNU6-80P-201ENST00000384195 107 ntBASIC0.29□□□□□ -2.36
PDLIM3Q53GG5 SNORD38.2-201ENST00000384470 69 ntBASIC0.29□□□□□ -2.36
PDLIM3Q53GG5 MIR548M-201ENST00000408260 86 ntBASIC0.29□□□□□ -2.36
PDLIM3Q53GG5 AC073261.1-201ENST00000429409 121 ntBASIC0.29□□□□□ -2.36
PDLIM3Q53GG5 RNU7-161P-201ENST00000517289 62 ntBASIC0.29□□□□□ -2.36
PDLIM3Q53GG5 RNU6-170P-201ENST00000362832 104 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 RNU6-704P-201ENST00000364162 103 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.247-201ENST00000364500 92 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 MIR516A2-201ENST00000384888 90 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 MIR516A1-201ENST00000385033 90 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 RNU2-59P-201ENST00000410482 191 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 MIR1468-201ENST00000410600 86 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 AC244505.6-201ENST00000452829 130 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms