Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.1□□□□□ -2.58
CHD3Q12873 SNORA63.7-201ENST00000365579 123 ntBASIC-1.1□□□□□ -2.58
CHD3Q12873 RNU6-588P-201ENST00000410281 105 ntBASIC-1.1□□□□□ -2.58
CHD3Q12873 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 RNU6-935P-201ENST00000410371 100 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 AL161932.1-201ENST00000437408 146 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 RNU6-240P-201ENST00000516098 97 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 RNU6-570P-201ENST00000517051 105 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 AC022079.1-201ENST00000621546 602 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 TRDV1-202ENST00000621643 102 ntBASIC-1.1□□□□□ -2.59
CHD3Q12873 SNORD113-8-201ENST00000363497 74 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU6-226P-201ENST00000363778 107 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU4-24P-201ENST00000364565 139 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU6-762P-201ENST00000517107 102 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 Y_RNA.718-201ENST00000517110 102 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 AC103591.3-201ENST00000608684 209 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU6-101P-201ENST00000410323 104 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 AC018880.2-201ENST00000414265 201 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU6-75P-201ENST00000515944 104 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU6-561P-201ENST00000516222 102 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-1.11□□□□□ -2.59
CHD3Q12873 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.12□□□□□ -2.59
CHD3Q12873 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.12□□□□□ -2.59
CHD3Q12873 RNU2-16P-201ENST00000410712 136 ntBASIC-1.12□□□□□ -2.59
CHD3Q12873 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.12□□□□□ -2.59
CHD3Q12873 AC107027.2-201ENST00000512197 115 ntBASIC-1.12□□□□□ -2.59
CHD3Q12873 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.12□□□□□ -2.59
CHD3Q12873 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 SNORD77B-201ENST00000391112 67 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 SNORA19.1-201ENST00000410656 129 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 MTND1P29-201ENST00000448112 647 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 RNU7-24P-201ENST00000458867 62 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 MIR4464-201ENST00000580818 92 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 MIR6888-201ENST00000621977 67 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 AC090574.1-201ENST00000623186 233 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 snoU18.1-201ENST00000629629 71 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 RNU6-924P-201ENST00000362926 108 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 Y_RNA.286-201ENST00000364813 102 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 Y_RNA.463-201ENST00000384271 102 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 Y_RNA.526-201ENST00000384572 110 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 MIR616-201ENST00000385293 97 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-1.13□□□□□ -2.59
CHD3Q12873 SNORD42B-201ENST00000458893 67 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 U4.5-201ENST00000617137 123 ntBASIC-1.13□□□□□ -2.59
CHD3Q12873 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.14□□□□□ -2.59
CHD3Q12873 RNU6-119P-201ENST00000364882 107 ntBASIC-1.14□□□□□ -2.59
CHD3Q12873 SNORD81.2-201ENST00000365153 76 ntBASIC-1.14□□□□□ -2.59
CHD3Q12873 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.14□□□□□ -2.59
CHD3Q12873 RNU4-61P-201ENST00000411243 107 ntBASIC-1.14□□□□□ -2.59
CHD3Q12873 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.14□□□□□ -2.59
CHD3Q12873 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 RNU6-1040P-201ENST00000383974 107 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 SNORD115-46-201ENST00000390982 71 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 MIR1255B2-201ENST00000408618 67 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 AL353691.2-201ENST00000443795 59 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 AC082651.2-201ENST00000496833 166 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 MIR6739-201ENST00000622461 75 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 SNORA63.6-201ENST00000364921 119 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 RNU4-43P-201ENST00000410628 137 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 AC069439.1-201ENST00000494739 167 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 RNU7-154P-201ENST00000516194 62 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 RNY4P20-201ENST00000516678 93 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 CYP3A54P-201ENST00000566950 75 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 AC104985.2-201ENST00000620598 500 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 AC021753.1-201ENST00000635724 168 ntBASIC-1.15□□□□□ -2.59
CHD3Q12873 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 RNU6-102P-201ENST00000384485 104 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 RNY4P36-201ENST00000391116 96 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 RNU6-466P-201ENST00000391224 103 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 RNU6-121P-201ENST00000410525 99 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 SNORD116-25-201ENST00000516517 92 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 U7.5-201ENST00000517224 61 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 AP002795.1-201ENST00000534879 84 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.16□□□□□ -2.59
CHD3Q12873 MIR4536-1-201ENST00000583537 88 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 MIR1246-201ENST00000636535 73 ntBASIC-1.16□□□□□ -2.59
CHD3Q12873 Y_RNA.166-201ENST00000363730 102 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 RNU6-164P-201ENST00000364604 103 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 RNU6-662P-201ENST00000384253 104 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 AC025253.1-201ENST00000613623 543 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 AC084781.2-201ENST00000615568 161 ntBASIC-1.16□□□□□ -2.6
CHD3Q12873 SNORD115-19-201ENST00000363098 82 ntBASIC-1.17□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms