Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 RNU6-590P-201ENST00000365039 107 ntBASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 SNORA67.3-201ENST00000384366 140 ntBASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 SNORD83.1-201ENST00000411362 77 ntBASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 HMGN2P38-201ENST00000423806 265 ntBASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 RNU6-871P-201ENST00000516122 100 ntBASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 Y_RNA.681-201ENST00000516445 113 ntBASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.92□□□□□ -2.1
HIF3AQ9Y2N7 Y_RNA.13-201ENST00000362403 112 ntBASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 RNU4-52P-201ENST00000384209 138 ntBASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 MIR520H-201ENST00000385126 88 ntBASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 RNU4-53P-201ENST00000410828 140 ntBASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 AC025033.1-201ENST00000463883 194 ntBASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 MIR3937-201ENST00000580135 106 ntBASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 TRDV1-202ENST00000621643 102 ntBASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HIF3AQ9Y2N7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.12-201ENST00000362393 112 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 MIR1257-201ENST00000408490 117 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 MIR18B-201ENST00000454574 71 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 snoU13.17-201ENST00000458802 104 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 RNU7-185P-201ENST00000459215 60 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 snoU13.26-201ENST00000459452 105 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.809-201ENST00000516058 95 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-539P-201ENST00000516665 103 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 MIR3664-201ENST00000579074 99 ntBASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.264-201ENST00000364665 102 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-580P-201ENST00000365159 107 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 SNORA40.18-201ENST00000391200 128 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 RNA5SP425-201ENST00000410336 112 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-1054P-201ENST00000411293 104 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-687P-201ENST00000516443 89 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-303P-201ENST00000517091 106 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 MIR3198-2-201ENST00000577868 80 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 MIR7843-201ENST00000622274 79 ntBASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.330-201ENST00000365230 109 ntBASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 SNORA3.2-201ENST00000408221 125 ntBASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-717P-201ENST00000459076 104 ntBASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 RNU1-40P-201ENST00000516816 164 ntBASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 RNU1-97P-201ENST00000516872 164 ntBASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 U6.100-201ENST00000636230 99 ntBASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 MIR1297-201ENST00000637311 77 ntBASIC1.88□□□□□ -2.11
HIF3AQ9Y2N7 RNA5SP432-201ENST00000362480 116 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 RNU5F-1-201ENST00000362507 117 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.340-201ENST00000365330 92 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-1051P-201ENST00000365471 102 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.371-201ENST00000365591 113 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 MIR504-201ENST00000385065 83 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.596-201ENST00000410462 109 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 AL356320.1-201ENST00000429616 163 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 AC092628.1-201ENST00000436250 252 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.697-201ENST00000516776 113 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-165P-201ENST00000517170 99 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 MIR548H5-201ENST00000580314 60 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 MIR6082-201ENST00000613604 109 ntBASIC1.87□□□□□ -2.11
HIF3AQ9Y2N7 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.239-201ENST00000364444 113 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 RNA5SP160-201ENST00000364866 120 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-634P-201ENST00000459134 106 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 RNU1-41P-201ENST00000516161 162 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 RNU1-48P-201ENST00000516400 162 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 AL512310.8-201ENST00000550183 120 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 MIR3140-201ENST00000583685 90 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 MIR6873-201ENST00000622788 63 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 AP000553.5-201ENST00000641933 54 ntBASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-330P-201ENST00000363015 107 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 Y_RNA.207-201ENST00000364142 106 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 RNU6-587P-201ENST00000391282 106 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 AC074348.1-201ENST00000426503 132 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 AC008834.1-201ENST00000511612 175 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 MIR4771-2-201ENST00000577758 74 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 MIR4771-1-201ENST00000582617 74 ntBASIC1.85□□□□□ -2.11
HIF3AQ9Y2N7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 SNORD101-201ENST00000384027 73 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 SNORA8.1-201ENST00000384250 140 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 RNA5SP338-201ENST00000410495 85 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 AC125388.1-201ENST00000459631 156 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 RNA5SP364-201ENST00000516938 78 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 YWHAEP2-201ENST00000580066 112 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 YWHAEP3-201ENST00000582767 121 ntBASIC1.84□□□□□ -2.11
HIF3AQ9Y2N7 MIR4448-201ENST00000584360 86 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 1502.9 ms