Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 Y_RNA.536-201ENST00000384621 113 ntBASIC0.84□□□□□ -2.27
NUP88Q99567 SNORA7.5-201ENST00000410672 110 ntBASIC0.84□□□□□ -2.27
NUP88Q99567 RNU6-659P-201ENST00000516454 104 ntBASIC0.84□□□□□ -2.27
NUP88Q99567 MIR3914-2-201ENST00000637339 95 ntBASIC0.84□□□□□ -2.27
NUP88Q99567 MIR6866-201ENST00000638146 69 ntBASIC0.84□□□□□ -2.27
NUP88Q99567 Y_RNA.155-201ENST00000363632 101 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 Y_RNA.507-201ENST00000384500 99 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 MIR548A3-201ENST00000385297 97 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 RNU6-679P-201ENST00000391003 106 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 RNU6-1307P-201ENST00000391012 103 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 AC008267.6-201ENST00000441664 139 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 SNORD33.1-201ENST00000516213 88 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 Y_RNA.712-201ENST00000517011 92 ntBASIC0.83□□□□□ -2.28
NUP88Q99567 Y_RNA.127-201ENST00000363386 109 ntBASIC0.82□□□□□ -2.28
NUP88Q99567 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.82□□□□□ -2.28
NUP88Q99567 AC132825.6-201ENST00000638861 357 ntBASIC0.82□□□□□ -2.28
NUP88Q99567 AL512310.12-203ENST00000640543 90 ntBASIC0.82□□□□□ -2.28
NUP88Q99567 HSBP1P2-201ENST00000299671 229 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 Y_RNA.174-201ENST00000363781 105 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 RNU4-67P-201ENST00000364569 141 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 Y_RNA.344-201ENST00000365381 112 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 Y_RNA.374-201ENST00000365606 101 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 RNY1P8-201ENST00000383970 114 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 RNU6-429P-201ENST00000384582 108 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 RNU6-291P-201ENST00000384720 107 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 MIR548A1-201ENST00000385041 97 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 MIR140-201ENST00000385282 100 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 AL606490.4-201ENST00000423117 127 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 MIR3910-1-201ENST00000580936 111 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 MIR376B-201ENST00000614515 100 ntBASIC0.81□□□□□ -2.28
NUP88Q99567 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
NUP88Q99567 Y_RNA.32-201ENST00000362589 110 ntBASIC0.8□□□□□ -2.28
NUP88Q99567 Y_RNA.362-201ENST00000365518 110 ntBASIC0.8□□□□□ -2.28
NUP88Q99567 RNU6-81P-201ENST00000365608 104 ntBASIC0.8□□□□□ -2.28
NUP88Q99567 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.8□□□□□ -2.28
NUP88Q99567 RNU6-409P-201ENST00000384114 104 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 SNORD38.2-201ENST00000384470 69 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 MIR644A-201ENST00000385262 94 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 RNU6-816P-201ENST00000390914 107 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 RNU6-1268P-201ENST00000391214 107 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 RNU6-1239P-201ENST00000391310 107 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 RNU6-62P-201ENST00000516526 102 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 SNORA31.14-201ENST00000516728 116 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 AC007012.1-201ENST00000567192 175 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 MIR3678-201ENST00000578455 94 ntBASIC0.79□□□□□ -2.28
NUP88Q99567 Y_RNA.261-201ENST00000364631 102 ntBASIC0.78□□□□□ -2.28
NUP88Q99567 RNU6-1117P-201ENST00000384525 104 ntBASIC0.78□□□□□ -2.28
NUP88Q99567 MIR34C-201ENST00000384831 77 ntBASIC0.78□□□□□ -2.28
NUP88Q99567 MIR548H5-201ENST00000580314 60 ntBASIC0.78□□□□□ -2.28
NUP88Q99567 AL670379.3-201ENST00000605040 251 ntBASIC0.78□□□□□ -2.28
NUP88Q99567 SNORA63.5-201ENST00000363548 123 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 RNU6-1229P-201ENST00000364295 107 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 MIR193B-201ENST00000384907 83 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 BX276092.1-201ENST00000427368 251 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 AL590095.2-201ENST00000604136 117 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 RNU7-10P-201ENST00000607194 63 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 AL365222.1-201ENST00000614661 98 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 MIR6513-201ENST00000621188 64 ntBASIC0.77□□□□□ -2.29
NUP88Q99567 Y_RNA.56-201ENST00000362798 112 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 RNU6-363P-201ENST00000362895 105 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 Y_RNA.360-201ENST00000365512 102 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 Y_RNA.567-201ENST00000384736 106 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 MIR1912-201ENST00000410389 80 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 RNU6-733P-201ENST00000410759 104 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 MTND5P40-201ENST00000559945 246 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 uc_338.16-201ENST00000621804 95 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 AL162726.3-218ENST00000636401 95 ntBASIC0.76□□□□□ -2.29
NUP88Q99567 RNU4-61P-201ENST00000411243 107 ntBASIC0.75□□□□□ -2.29
NUP88Q99567 MIR1273G-201ENST00000577677 100 ntBASIC0.75□□□□□ -2.29
NUP88Q99567 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.75□□□□□ -2.29
NUP88Q99567 AC092634.7-201ENST00000621022 103 ntBASIC0.75□□□□□ -2.29
NUP88Q99567 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
NUP88Q99567 RNA5SP499-201ENST00000363982 119 ntBASIC0.74□□□□□ -2.29
NUP88Q99567 Y_RNA.309-201ENST00000365046 111 ntBASIC0.74□□□□□ -2.29
NUP88Q99567 MIR635-201ENST00000384830 98 ntBASIC0.74□□□□□ -2.29
NUP88Q99567 MIR936-201ENST00000401264 98 ntBASIC0.74□□□□□ -2.29
NUP88Q99567 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.74□□□□□ -2.29
NUP88Q99567 RNU6-135P-201ENST00000516769 101 ntBASIC0.74□□□□□ -2.29
NUP88Q99567 AL035470.1-201ENST00000622571 220 ntBASIC0.74□□□□□ -2.29
NUP88Q99567 AC098934.3-201ENST00000430450 190 ntBASIC0.73□□□□□ -2.29
NUP88Q99567 RPL39P34-201ENST00000477141 156 ntBASIC0.73□□□□□ -2.29
NUP88Q99567 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.73□□□□□ -2.29
NUP88Q99567 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.73□□□□□ -2.29
NUP88Q99567 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.73□□□□□ -2.29
NUP88Q99567 Y_RNA.30-201ENST00000362572 97 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 Y_RNA.85-201ENST00000363014 111 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 RNU6-945P-201ENST00000383947 107 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 SPINT5P-201ENST00000448174 155 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 RNA5SP121-201ENST00000516537 101 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 RNA5SP94-201ENST00000516917 108 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 RNU6-789P-201ENST00000517105 102 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 AC138869.1-201ENST00000568623 124 ntBASIC0.72□□□□□ -2.29
NUP88Q99567 SNORD114-23-201ENST00000363536 72 ntBASIC0.71□□□□□ -2.3
NUP88Q99567 RNA5SP457-201ENST00000363657 124 ntBASIC0.71□□□□□ -2.3
NUP88Q99567 RNU6-22P-201ENST00000384355 107 ntBASIC0.71□□□□□ -2.3
NUP88Q99567 Y_RNA.549-201ENST00000384657 102 ntBASIC0.71□□□□□ -2.3
NUP88Q99567 RNU6-1154P-201ENST00000391001 104 ntBASIC0.71□□□□□ -2.3
NUP88Q99567 MIR4679-2-201ENST00000578358 77 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 350.6 ms