Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-90P-201ENST00000606352 106 ntBASIC-2.62□□□□□ -2.83
CUX1P39880 MIR376B-201ENST00000614515 100 ntBASIC-2.62□□□□□ -2.83
CUX1P39880 RNU6-230P-201ENST00000362457 104 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 RNU6-235P-201ENST00000362644 107 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 SNORD115-31-201ENST00000365318 82 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 Y_RNA.462-201ENST00000384268 102 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 SNORD78.2-201ENST00000391076 69 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 AL009048.1-201ENST00000450437 298 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 SCARNA15-202ENST00000516881 127 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 U7.5-201ENST00000517224 61 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 Y_RNA.39-201ENST00000362620 98 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 MTCO2P19-201ENST00000427513 598 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 Y_RNA.704-201ENST00000516851 102 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 MIR548W-201ENST00000581970 74 ntBASIC-2.63□□□□□ -2.83
CUX1P39880 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-2.63□□□□□ -2.83
CUX1P39880 RNY4P9-201ENST00000363194 97 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 MIR548Q-201ENST00000408404 100 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 RNU4-69P-201ENST00000410677 143 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-2.64□□□□□ -2.83
CUX1P39880 AC107399.1-201ENST00000451226 265 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 MTCO2P4-201ENST00000517968 247 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 AL512360.1-201ENST00000555346 234 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 AC120024.2-201ENST00000576526 175 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 AC097520.1-201ENST00000624435 385 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 TPTEP1-208ENST00000636884 213 ntBASIC-2.64□□□□□ -2.83
CUX1P39880 RNU6-563P-201ENST00000364872 108 ntBASIC-2.65□□□□□ -2.83
CUX1P39880 Y_RNA.298-201ENST00000364960 107 ntBASIC-2.65□□□□□ -2.83
CUX1P39880 Y_RNA.357-201ENST00000365487 109 ntBASIC-2.65□□□□□ -2.83
CUX1P39880 MIR1244-1-201ENST00000612829 85 ntBASIC-2.65□□□□□ -2.83
CUX1P39880 MIR1244-3-201ENST00000635744 85 ntBASIC-2.65□□□□□ -2.83
CUX1P39880 MIR1244-2-201ENST00000636449 85 ntBASIC-2.65□□□□□ -2.83
CUX1P39880 MIR1244-4-202ENST00000636813 85 ntBASIC-2.65□□□□□ -2.83
CUX1P39880 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 RNU6-763P-201ENST00000390865 106 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 RNU6-1052P-201ENST00000411398 104 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 Z83846.1-201ENST00000446798 265 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 MTND2P31-201ENST00000512602 616 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 Y_RNA.655-201ENST00000515919 96 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 RNU6-719P-201ENST00000516671 104 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 RNU6-570P-201ENST00000517051 105 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 U6.92-201ENST00000636464 89 ntBASIC-2.66□□□□□ -2.84
CUX1P39880 MIR367-201ENST00000362299 68 ntBASIC-2.67□□□□□ -2.84
CUX1P39880 RNU6-495P-201ENST00000362995 107 ntBASIC-2.67□□□□□ -2.84
CUX1P39880 SNORA15B-2-201ENST00000384058 135 ntBASIC-2.67□□□□□ -2.84
CUX1P39880 SNORA15B-1-201ENST00000384334 135 ntBASIC-2.67□□□□□ -2.84
CUX1P39880 snoU13.10-201ENST00000459301 103 ntBASIC-2.67□□□□□ -2.84
CUX1P39880 AP002392.1-201ENST00000537692 208 ntBASIC-2.67□□□□□ -2.84
CUX1P39880 RNU6-766P-201ENST00000362478 107 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-845P-201ENST00000362578 103 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 Y_RNA.75-201ENST00000362927 97 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-990P-201ENST00000364385 104 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-608P-201ENST00000383927 104 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-1040P-201ENST00000383974 107 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 Y_RNA.530-201ENST00000384587 101 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-1156P-201ENST00000410365 100 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 AL035461.1-201ENST00000421490 332 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 Y_RNA.691-201ENST00000516611 103 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 AP003461.1-201ENST00000528866 78 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 MIR6128-201ENST00000615528 109 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 FTX_4.1-201ENST00000616291 147 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 AC007485.1-201ENST00000616755 206 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-191P-201ENST00000516295 94 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 MTND3P12-201ENST00000559068 328 ntBASIC-2.68□□□□□ -2.84
CUX1P39880 RNU6-935P-201ENST00000410371 100 ntBASIC-2.69□□□□□ -2.84
CUX1P39880 AL365205.2-201ENST00000594586 68 ntBASIC-2.69□□□□□ -2.84
CUX1P39880 AL157392.4-201ENST00000609756 345 ntBASIC-2.69□□□□□ -2.84
CUX1P39880 AC084782.3-201ENST00000612282 578 ntBASIC-2.69□□□□□ -2.84
CUX1P39880 AL359880.1-201ENST00000621879 266 ntBASIC-2.69□□□□□ -2.84
CUX1P39880 RNU4-24P-201ENST00000364565 139 ntBASIC-2.7□□□□□ -2.84
CUX1P39880 Y_RNA.344-201ENST00000365381 112 ntBASIC-2.7□□□□□ -2.84
CUX1P39880 RNU6-1307P-201ENST00000391012 103 ntBASIC-2.7□□□□□ -2.84
CUX1P39880 Y_RNA.592-201ENST00000410274 109 ntBASIC-2.7□□□□□ -2.84
CUX1P39880 RNU6-764P-201ENST00000516396 105 ntBASIC-2.7□□□□□ -2.84
CUX1P39880 AP000720.1-201ENST00000625091 483 ntBASIC-2.7□□□□□ -2.84
CUX1P39880 Y_RNA.80-201ENST00000362996 102 ntBASIC-2.71□□□□□ -2.84
CUX1P39880 Y_RNA.301-201ENST00000364990 103 ntBASIC-2.71□□□□□ -2.84
CUX1P39880 RNU6-690P-201ENST00000365242 106 ntBASIC-2.71□□□□□ -2.84
CUX1P39880 MIR526A2-201ENST00000390198 65 ntBASIC-2.71□□□□□ -2.84
CUX1P39880 AL593851.1-201ENST00000426171 157 ntBASIC-2.71□□□□□ -2.84
CUX1P39880 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.71□□□□□ -2.84
CUX1P39880 AL021368.1-201ENST00000607490 540 ntBASIC-2.71□□□□□ -2.84
CUX1P39880 RNU6-99P-201ENST00000364721 107 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 RNU6-1014P-201ENST00000383940 103 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 Y_RNA.396-201ENST00000383949 103 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 Y_RNA.521-201ENST00000384560 114 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 RNU6-906P-201ENST00000384700 70 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 RNU6-101P-201ENST00000410323 104 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 RNU7-110P-201ENST00000516891 62 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 AC005899.2-201ENST00000584353 90 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 AC073869.6-201ENST00000640656 341 ntBASIC-2.72□□□□□ -2.84
CUX1P39880 Y_RNA.173-201ENST00000363776 113 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 Y_RNA.201-201ENST00000364052 96 ntBASIC-2.73□□□□□ -2.85
Retrieved 100 of 98,524 protein–RNA pairs in 208.2 ms