Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.328-201ENST00000365208 113 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 RNU6-80P-201ENST00000384195 107 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 RNU6-679P-201ENST00000391003 106 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 MIR548M-201ENST00000408260 86 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 RNU6-971P-201ENST00000516920 106 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 AP001362.1-201ENST00000625165 124 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 AC010487.4-201ENST00000637027 61 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 MTND5P18-201ENST00000445624 1801 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 RNY1P8-201ENST00000383970 114 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 MIR193B-201ENST00000384907 83 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 MIR548D2-201ENST00000384955 97 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 RNU6-772P-201ENST00000516042 105 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 SNORA31.14-201ENST00000516728 116 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.56□□□□□ -2.32
SHMT1P34896 Y_RNA.32-201ENST00000362589 110 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 Y_RNA.56-201ENST00000362798 112 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 AL157398.1-201ENST00000452981 186 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 RNU6-1234P-201ENST00000516877 103 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 RNU7-10P-201ENST00000607194 63 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 AC092634.7-201ENST00000621022 103 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 MIR5087-201ENST00000635826 76 ntBASIC0.55□□□□□ -2.32
SHMT1P34896 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.55□□□□□ -2.32
SHMT1P34896 AL157777.2-201ENST00000258070 137 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 Y_RNA.127-201ENST00000363386 109 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 RNU6-945P-201ENST00000383947 107 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 RNU6-187P-201ENST00000384139 106 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 MIR644A-201ENST00000385262 94 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 AC114737.2-201ENST00000421583 173 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 RN7SKP12-201ENST00000516275 143 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 RNA5SP94-201ENST00000516917 108 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 MIR1273G-201ENST00000577677 100 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 MIR4500-201ENST00000579472 76 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 MIR548H5-201ENST00000580314 60 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 Y_RNA.773-201ENST00000607168 90 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
SHMT1P34896 RNU6-735P-201ENST00000410612 107 ntBASIC0.53□□□□□ -2.32
SHMT1P34896 RNU6-521P-201ENST00000516663 105 ntBASIC0.53□□□□□ -2.32
SHMT1P34896 RNU6-1307P-201ENST00000391012 103 ntBASIC0.52□□□□□ -2.33
SHMT1P34896 Y_RNA.630-201ENST00000411370 108 ntBASIC0.52□□□□□ -2.33
SHMT1P34896 RNU7-107P-201ENST00000459121 61 ntBASIC0.52□□□□□ -2.33
SHMT1P34896 Y_RNA.712-201ENST00000517011 92 ntBASIC0.52□□□□□ -2.33
SHMT1P34896 MIR376B-201ENST00000614515 100 ntBASIC0.52□□□□□ -2.33
SHMT1P34896 SNORD18A-201ENST00000363753 72 ntBASIC0.51□□□□□ -2.33
SHMT1P34896 Y_RNA.567-201ENST00000384736 106 ntBASIC0.51□□□□□ -2.33
SHMT1P34896 AC138869.1-201ENST00000568623 124 ntBASIC0.51□□□□□ -2.33
SHMT1P34896 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.51□□□□□ -2.33
SHMT1P34896 MIR1255B1-201ENST00000636325 63 ntBASIC0.51□□□□□ -2.33
SHMT1P34896 Y_RNA.71-201ENST00000362892 104 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 RNU6-363P-201ENST00000362895 105 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 RNU6-1229P-201ENST00000364295 107 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 RNU4-67P-201ENST00000364569 141 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 Y_RNA.360-201ENST00000365512 102 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 SNORD38.2-201ENST00000384470 69 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 MIR548I2-201ENST00000408348 149 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 MIR4639-201ENST00000584938 69 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 AC243829.6-201ENST00000612652 106 ntBASIC0.5□□□□□ -2.33
SHMT1P34896 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.5□□□□□ -2.33
SHMT1P34896 RNA5SP325-201ENST00000363756 130 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 Y_RNA.218-201ENST00000364218 104 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 RNA5SP517-201ENST00000364724 117 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 Y_RNA.507-201ENST00000384500 99 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 MIR635-201ENST00000384830 98 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 SNORA40.8-201ENST00000411034 126 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 SNORD71-201ENST00000411292 86 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 RNU6-659P-201ENST00000516454 104 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 MIR3914-2-201ENST00000637339 95 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 MIR924-201ENST00000638017 53 ntBASIC0.49□□□□□ -2.33
SHMT1P34896 SNORA63.5-201ENST00000363548 123 ntBASIC0.48□□□□□ -2.33
SHMT1P34896 RNA5SP245-201ENST00000364239 121 ntBASIC0.48□□□□□ -2.33
SHMT1P34896 Y_RNA.344-201ENST00000365381 112 ntBASIC0.48□□□□□ -2.33
SHMT1P34896 MIR34C-201ENST00000384831 77 ntBASIC0.48□□□□□ -2.33
SHMT1P34896 TMSB4XP3-201ENST00000445144 114 ntBASIC0.48□□□□□ -2.33
SHMT1P34896 U6.95-201ENST00000636931 70 ntBASIC0.48□□□□□ -2.33
SHMT1P34896 VTRNA1-3-201ENST00000365645 89 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 SNORD116-14-201ENST00000383894 92 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 SNORD116-17-201ENST00000383929 92 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 SNORD116-15-201ENST00000384445 92 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 SNORD28-201ENST00000384706 75 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 SNORD116-19-201ENST00000384729 92 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 MIR518A1-201ENST00000385068 85 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 SNORA7.5-201ENST00000410672 110 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 RPL39P34-201ENST00000477141 156 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 AL512310.12-203ENST00000640543 90 ntBASIC0.47□□□□□ -2.33
SHMT1P34896 Y_RNA.155-201ENST00000363632 101 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 Y_RNA.362-201ENST00000365518 110 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 RNU6-409P-201ENST00000384114 104 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 RNU6-571P-201ENST00000384128 107 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 SNORA8.2-201ENST00000384372 139 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 MIR1912-201ENST00000410389 80 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 BX276092.1-201ENST00000427368 251 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 AC244505.6-201ENST00000452829 130 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 Y_RNA.649-201ENST00000459077 103 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.46□□□□□ -2.34
SHMT1P34896 RNU6-1018P-201ENST00000516577 106 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 SCARNA16.5-201ENST00000517114 183 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 RNA5SP47-201ENST00000517230 109 ntBASIC0.46□□□□□ -2.34
SHMT1P34896 MIR4679-2-201ENST00000578358 77 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms