Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC037487.3-201ENST00000606668 112 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 AC092794.1-201ENST00000612734 582 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 AC090574.1-201ENST00000623186 233 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 snoU18.1-201ENST00000629629 71 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 RNY4P27-201ENST00000363341 96 ntBASIC-1.04□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.04□□□□□ -2.58
CCDC88AQ3V6T2 MIR204-201ENST00000385200 110 ntBASIC-1.04□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.04□□□□□ -2.58
CCDC88AQ3V6T2 SNORA20.3-201ENST00000516880 132 ntBASIC-1.04□□□□□ -2.58
CCDC88AQ3V6T2 AC006504.6-201ENST00000590142 199 ntBASIC-1.04□□□□□ -2.58
CCDC88AQ3V6T2 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-1.04□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 AL603914.1-201ENST00000401964 204 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 RNU4-43P-201ENST00000410628 137 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 RNA5SP144-201ENST00000410846 116 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 AC098614.3-201ENST00000438957 440 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 SERF1AP1-201ENST00000514575 187 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 RNU7-137P-201ENST00000516788 62 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 AC084782.3-201ENST00000612282 578 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 RNY4P6-201ENST00000363667 96 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.221-201ENST00000364248 96 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 RPS29P30-201ENST00000600975 111 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 AC009779.6-201ENST00000603972 165 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 MIR6854-201ENST00000614935 69 ntBASIC-1.05□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.171-201ENST00000363760 102 ntBASIC-1.06□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.06□□□□□ -2.58
CCDC88AQ3V6T2 RNY4P36-201ENST00000391116 96 ntBASIC-1.06□□□□□ -2.58
CCDC88AQ3V6T2 MIR367-201ENST00000362299 68 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 SNORD74.6-201ENST00000364796 70 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 SNORD115-35-201ENST00000365122 82 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-480P-201ENST00000384332 107 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 RNA5SP236-201ENST00000516169 116 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 AC104985.2-201ENST00000620598 500 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-1272P-201ENST00000362776 107 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 SNORD81.2-201ENST00000365153 76 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 MIR518B-201ENST00000385127 83 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 SNORD63B-201ENST00000411005 70 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 AC244090.1-201ENST00000441884 93 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-1143P-201ENST00000516125 104 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-570P-201ENST00000517051 105 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 AP000770.2-201ENST00000623694 100 ntBASIC-1.07□□□□□ -2.58
CCDC88AQ3V6T2 SNORD114-4-201ENST00000363962 75 ntBASIC-1.08□□□□□ -2.58
CCDC88AQ3V6T2 MIR616-201ENST00000385293 97 ntBASIC-1.08□□□□□ -2.58
CCDC88AQ3V6T2 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.08□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-277P-201ENST00000516272 106 ntBASIC-1.08□□□□□ -2.58
CCDC88AQ3V6T2 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.08□□□□□ -2.58
CCDC88AQ3V6T2 MIR1246-201ENST00000636535 73 ntBASIC-1.08□□□□□ -2.58
CCDC88AQ3V6T2 Z83846.1-201ENST00000446798 265 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 AP000676.1-201ENST00000533307 52 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-154P-201ENST00000384306 106 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-706P-201ENST00000517229 104 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 AL359881.1-201ENST00000602916 267 ntBASIC-1.09□□□□□ -2.58
CCDC88AQ3V6T2 RNU6-101P-201ENST00000410323 104 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 FGF7P6-202ENST00000451282 293 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 RNU7-195P-201ENST00000458793 62 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 RNU7-55P-201ENST00000459426 62 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 AL132765.2-201ENST00000610812 351 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 AC073869.6-201ENST00000640656 341 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 MTND5P18-201ENST00000445624 1801 ntBASIC-1.1□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.286-201ENST00000364813 102 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-290P-201ENST00000365212 101 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-571P-201ENST00000384128 107 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 MT-TL1-201ENST00000386347 75 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-121P-201ENST00000410525 99 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 SNORD116-25-201ENST00000516517 92 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 RNU5B-6P-201ENST00000516765 68 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 MIR3179-1-201ENST00000578940 84 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 MIR3179-2-201ENST00000579107 84 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 MIR3179-3-201ENST00000579566 84 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 MIR3179-4-201ENST00000617599 84 ntBASIC-1.11□□□□□ -2.59
CCDC88AQ3V6T2 SNORD36A-201ENST00000362874 73 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 SNORD2.1-201ENST00000458762 69 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 AC107027.2-201ENST00000512197 115 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 AC022079.1-201ENST00000621546 602 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 MIR376A2-201ENST00000636782 80 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-664P-201ENST00000362381 107 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.24-201ENST00000362508 103 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.57-201ENST00000362806 113 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 MIR516A2-201ENST00000384888 90 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 MIR516A1-201ENST00000385033 90 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-1109P-201ENST00000391187 107 ntBASIC-1.12□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 349.4 ms