Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC105081.1-201ENST00000617727 106 ntBASIC0.66□□□□□ -2.3
HOXC9P31274 AP001340.1-201ENST00000624405 217 ntBASIC0.66□□□□□ -2.3
HOXC9P31274 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
HOXC9P31274 COX6CP6-201ENST00000490840 228 ntBASIC0.65□□□□□ -2.31
HOXC9P31274 RNU6-448P-201ENST00000517052 107 ntBASIC0.65□□□□□ -2.31
HOXC9P31274 RNA5SP330-201ENST00000517096 96 ntBASIC0.65□□□□□ -2.31
HOXC9P31274 IGKV1-22-201ENST00000524313 326 ntBASIC0.65□□□□□ -2.31
HOXC9P31274 AL359881.1-201ENST00000602916 267 ntBASIC0.65□□□□□ -2.31
HOXC9P31274 U7.2-201ENST00000607576 63 ntBASIC0.65□□□□□ -2.31
HOXC9P31274 MIR6082-201ENST00000613604 109 ntBASIC0.65□□□□□ -2.31
HOXC9P31274 MIR18A-201ENST00000362310 71 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 RNA5SP133-201ENST00000363368 119 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 Y_RNA.299-201ENST00000364973 94 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 Y_RNA.343-201ENST00000365354 112 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 RNU6-1104P-201ENST00000384723 104 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 MIR1270-201ENST00000459320 83 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 AC002350.1-201ENST00000490759 375 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 RNU7-137P-201ENST00000516788 62 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 U6.109-201ENST00000636749 87 ntBASIC0.64□□□□□ -2.31
HOXC9P31274 RNA5SP117-201ENST00000365294 118 ntBASIC0.63□□□□□ -2.31
HOXC9P31274 MIR1263-201ENST00000408324 86 ntBASIC0.63□□□□□ -2.31
HOXC9P31274 MIR548I1-201ENST00000408810 149 ntBASIC0.63□□□□□ -2.31
HOXC9P31274 RN7SKP19-201ENST00000516016 252 ntBASIC0.63□□□□□ -2.31
HOXC9P31274 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.63□□□□□ -2.31
HOXC9P31274 RNU6-647P-201ENST00000364243 107 ntBASIC0.62□□□□□ -2.31
HOXC9P31274 SNORD77B-201ENST00000391112 67 ntBASIC0.62□□□□□ -2.31
HOXC9P31274 SNORD100-201ENST00000408573 76 ntBASIC0.62□□□□□ -2.31
HOXC9P31274 AC114737.2-201ENST00000421583 173 ntBASIC0.62□□□□□ -2.31
HOXC9P31274 Y_RNA.697-201ENST00000516776 113 ntBASIC0.62□□□□□ -2.31
HOXC9P31274 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.62□□□□□ -2.31
HOXC9P31274 RNU6-235P-201ENST00000362644 107 ntBASIC0.61□□□□□ -2.31
HOXC9P31274 Y_RNA.506-201ENST00000384494 102 ntBASIC0.61□□□□□ -2.31
HOXC9P31274 MIR140-201ENST00000385282 100 ntBASIC0.61□□□□□ -2.31
HOXC9P31274 RNU6-679P-201ENST00000391003 106 ntBASIC0.61□□□□□ -2.31
HOXC9P31274 RNU6-531P-201ENST00000516694 104 ntBASIC0.61□□□□□ -2.31
HOXC9P31274 MTND5P34-201ENST00000568888 325 ntBASIC0.61□□□□□ -2.31
HOXC9P31274 AC243829.6-201ENST00000612652 106 ntBASIC0.61□□□□□ -2.31
HOXC9P31274 MIR330-201ENST00000362196 94 ntBASIC0.6□□□□□ -2.31
HOXC9P31274 SNORD114-10-201ENST00000363409 72 ntBASIC0.6□□□□□ -2.31
HOXC9P31274 MTND4LP9-201ENST00000427694 174 ntBASIC0.6□□□□□ -2.31
HOXC9P31274 MIR924-201ENST00000638017 53 ntBASIC0.6□□□□□ -2.31
HOXC9P31274 RNU4-45P-201ENST00000365469 141 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 RNU6-945P-201ENST00000383947 107 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 SNORA40-201ENST00000388090 126 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
HOXC9P31274 AL158147.1-201ENST00000443970 75 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 AL157398.1-201ENST00000452981 186 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 RNU6-1194P-201ENST00000516208 104 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 RNU7-6P-201ENST00000516845 62 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 AP003327.1-201ENST00000529684 127 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 AC138749.4-201ENST00000563970 127 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 TUG1_4.1-201ENST00000619464 181 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 MIR5087-201ENST00000635826 76 ntBASIC0.59□□□□□ -2.31
HOXC9P31274 RNU4-58P-201ENST00000363192 141 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 RNA5SP457-201ENST00000363657 124 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 VTRNA1-3-201ENST00000365645 89 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 RNY1P5-201ENST00000383890 115 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 Y_RNA.448-201ENST00000384185 108 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 RNU6-616P-201ENST00000384353 107 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 Y_RNA.568-201ENST00000384742 113 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 MIR206-201ENST00000384872 86 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 RNU6-257P-201ENST00000410238 98 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 RNU6-781P-201ENST00000516377 101 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 RNU6-1061P-201ENST00000516530 99 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 RNU6-765P-201ENST00000516916 99 ntBASIC0.58□□□□□ -2.32
HOXC9P31274 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
HOXC9P31274 Y_RNA.32-201ENST00000362589 110 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 RNU6-774P-201ENST00000363238 107 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 Y_RNA.115-201ENST00000363272 98 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 Y_RNA.213-201ENST00000364178 111 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 Y_RNA.280-201ENST00000364765 112 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 RNU6-291P-201ENST00000384720 107 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 RNU6-535P-201ENST00000384722 107 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 MIR644A-201ENST00000385262 94 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 MT-TI-201ENST00000387365 69 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 RNU6-1321P-201ENST00000390905 107 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.57□□□□□ -2.32
HOXC9P31274 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.57□□□□□ -2.32
HOXC9P31274 RNU6-1211P-201ENST00000459179 105 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 RNU6-469P-201ENST00000516253 101 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 RNA5SP121-201ENST00000516537 101 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 MIR3678-201ENST00000578455 94 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 MIR8087-201ENST00000612745 78 ntBASIC0.57□□□□□ -2.32
HOXC9P31274 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HOXC9P31274 MIR101-2-201ENST00000362195 79 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 Y_RNA.119-201ENST00000363301 96 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 Y_RNA.528-201ENST00000384575 108 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 Y_RNA.536-201ENST00000384621 113 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 MIR759-201ENST00000390224 91 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 SNORA31.14-201ENST00000516728 116 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 MIR3163-201ENST00000581592 73 ntBASIC0.56□□□□□ -2.32
HOXC9P31274 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HOXC9P31274 Y_RNA.30-201ENST00000362572 97 ntBASIC0.55□□□□□ -2.32
HOXC9P31274 RNU6-733P-201ENST00000410759 104 ntBASIC0.55□□□□□ -2.32
HOXC9P31274 MIR3133-201ENST00000583157 78 ntBASIC0.55□□□□□ -2.32
HOXC9P31274 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.55□□□□□ -2.32
HOXC9P31274 Y_RNA.198-201ENST00000364013 98 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 Y_RNA.567-201ENST00000384736 106 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 239.3 ms