Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MIR2355-201ENST00000517199 87 ntBASIC-3.2□□□□□ -2.92
CCDC88BA6NC98 RN7SKP295-201ENST00000517264 153 ntBASIC-3.2□□□□□ -2.92
CCDC88BA6NC98 CYP3A54P-201ENST00000566950 75 ntBASIC-3.2□□□□□ -2.92
CCDC88BA6NC98 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-3.2□□□□□ -2.92
CCDC88BA6NC98 Y_RNA.531-201ENST00000384589 121 ntBASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 RNU6-258P-201ENST00000390884 101 ntBASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 RNU7-88P-201ENST00000458752 63 ntBASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 MTND2P31-201ENST00000512602 616 ntBASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 MIR376B-201ENST00000614515 100 ntBASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-3.21□□□□□ -2.92
CCDC88BA6NC98 RNY4P9-201ENST00000363194 97 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 Y_RNA.230-201ENST00000364348 109 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 U3.27-201ENST00000391237 200 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 MTND1P2-201ENST00000430604 821 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 RNU6-1299P-201ENST00000516316 100 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 RNU6-1191P-201ENST00000516799 107 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 RNU2-4P-201ENST00000606190 192 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 AP000240.1-201ENST00000609910 452 ntBASIC-3.22□□□□□ -2.92
CCDC88BA6NC98 RNU6-1252P-201ENST00000363054 104 ntBASIC-3.22□□□□□ -2.93
CCDC88BA6NC98 RNU6-990P-201ENST00000364385 104 ntBASIC-3.22□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.383-201ENST00000383855 97 ntBASIC-3.22□□□□□ -2.93
CCDC88BA6NC98 MIR451A-201ENST00000385059 72 ntBASIC-3.22□□□□□ -2.93
CCDC88BA6NC98 MIR1270-201ENST00000459320 83 ntBASIC-3.22□□□□□ -2.93
CCDC88BA6NC98 MIR548AB-201ENST00000584917 84 ntBASIC-3.22□□□□□ -2.93
CCDC88BA6NC98 RNU4-68P-201ENST00000364314 141 ntBASIC-3.23□□□□□ -2.93
CCDC88BA6NC98 RNU6-1307P-201ENST00000391012 103 ntBASIC-3.23□□□□□ -2.93
CCDC88BA6NC98 RNU6-935P-201ENST00000410371 100 ntBASIC-3.23□□□□□ -2.93
CCDC88BA6NC98 AL033528.1-201ENST00000453780 140 ntBASIC-3.23□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.633-201ENST00000459107 95 ntBASIC-3.23□□□□□ -2.93
CCDC88BA6NC98 MIR4724-201ENST00000579485 89 ntBASIC-3.23□□□□□ -2.93
CCDC88BA6NC98 AL589826.1-201ENST00000340697 249 ntBASIC-3.24□□□□□ -2.93
CCDC88BA6NC98 SNORD81.1-201ENST00000363064 77 ntBASIC-3.24□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.381-201ENST00000365666 102 ntBASIC-3.24□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.443-201ENST00000384135 111 ntBASIC-3.24□□□□□ -2.93
CCDC88BA6NC98 SNORA40.3-201ENST00000390964 122 ntBASIC-3.24□□□□□ -2.93
CCDC88BA6NC98 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-3.24□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.23-201ENST00000362496 106 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 RNU6-1059P-201ENST00000363752 98 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.188-201ENST00000363952 111 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 RNU6-1034P-201ENST00000365335 101 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 AL009048.1-201ENST00000450437 298 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 RNU7-2P-201ENST00000516096 62 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 MIR23C-201ENST00000579846 100 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 AP000720.1-201ENST00000625091 483 ntBASIC-3.25□□□□□ -2.93
CCDC88BA6NC98 RNU4-24P-201ENST00000364565 139 ntBASIC-3.26□□□□□ -2.93
CCDC88BA6NC98 AL353193.1-201ENST00000421444 268 ntBASIC-3.26□□□□□ -2.93
CCDC88BA6NC98 U7.5-201ENST00000517224 61 ntBASIC-3.26□□□□□ -2.93
CCDC88BA6NC98 MRPS36P3-201ENST00000519284 130 ntBASIC-3.26□□□□□ -2.93
CCDC88BA6NC98 AL512360.1-201ENST00000555346 234 ntBASIC-3.26□□□□□ -2.93
CCDC88BA6NC98 MIR367-201ENST00000362299 68 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 RNU6-774P-201ENST00000363238 107 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.360-201ENST00000365512 102 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 RNU6-1242P-201ENST00000391052 103 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 AP002392.1-201ENST00000537692 208 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 ZNF519P2-201ENST00000557032 169 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 MIR3942-201ENST00000585264 109 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 AC084782.3-201ENST00000612282 578 ntBASIC-3.27□□□□□ -2.93
CCDC88BA6NC98 RNU6-230P-201ENST00000362457 104 ntBASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.159-201ENST00000363674 87 ntBASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 RNU6-472P-201ENST00000384299 107 ntBASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 RNU6-1158P-201ENST00000391167 107 ntBASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 SNORA18.6-201ENST00000516792 115 ntBASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 FTX_4.1-201ENST00000616291 147 ntBASIC-3.28□□□□□ -2.93
CCDC88BA6NC98 Y_RNA.173-201ENST00000363776 113 ntBASIC-3.28□□□□□ -2.94
CCDC88BA6NC98 RNY1P6-201ENST00000384193 109 ntBASIC-3.28□□□□□ -2.94
CCDC88BA6NC98 RNU6-842P-201ENST00000384269 107 ntBASIC-3.28□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.39-201ENST00000362620 98 ntBASIC-3.29□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.373-201ENST00000365600 103 ntBASIC-3.29□□□□□ -2.94
CCDC88BA6NC98 RNU6-1040P-201ENST00000383974 107 ntBASIC-3.29□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.542-201ENST00000384641 111 ntBASIC-3.29□□□□□ -2.94
CCDC88BA6NC98 MTND4P28-201ENST00000426217 387 ntBASIC-3.29□□□□□ -2.94
CCDC88BA6NC98 RPS29P25-201ENST00000481709 171 ntBASIC-3.29□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.704-201ENST00000516851 102 ntBASIC-3.29□□□□□ -2.94
CCDC88BA6NC98 RNU5E-4P-201ENST00000364931 120 ntBASIC-3.3□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.630-201ENST00000411370 108 ntBASIC-3.3□□□□□ -2.94
CCDC88BA6NC98 RNU6-90P-201ENST00000606352 106 ntBASIC-3.3□□□□□ -2.94
CCDC88BA6NC98 AC005014.2-201ENST00000607795 599 ntBASIC-3.3□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.298-201ENST00000364960 107 ntBASIC-3.31□□□□□ -2.94
CCDC88BA6NC98 SNORA15B-2-201ENST00000384058 135 ntBASIC-3.31□□□□□ -2.94
CCDC88BA6NC98 SNORA15B-1-201ENST00000384334 135 ntBASIC-3.31□□□□□ -2.94
CCDC88BA6NC98 RNU6-1228P-201ENST00000391014 107 ntBASIC-3.31□□□□□ -2.94
CCDC88BA6NC98 MTND2P22-201ENST00000444325 1033 ntBASIC-3.31□□□□□ -2.94
CCDC88BA6NC98 MIR4659A-201ENST00000580269 81 ntBASIC-3.31□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.77-201ENST00000362962 107 ntBASIC-3.32□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.372-201ENST00000365599 102 ntBASIC-3.32□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.441-201ENST00000384123 112 ntBASIC-3.32□□□□□ -2.94
CCDC88BA6NC98 RNU4-69P-201ENST00000410677 143 ntBASIC-3.32□□□□□ -2.94
CCDC88BA6NC98 SNRPGP8-201ENST00000454064 226 ntBASIC-3.32□□□□□ -2.94
CCDC88BA6NC98 RNU6-751P-201ENST00000516382 101 ntBASIC-3.32□□□□□ -2.94
CCDC88BA6NC98 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.32□□□□□ -2.94
CCDC88BA6NC98 RNU6-235P-201ENST00000362644 107 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.75-201ENST00000362927 97 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 RNU6-495P-201ENST00000362995 107 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 RNU6-1014P-201ENST00000383940 103 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 RNU6-1248P-201ENST00000391096 64 ntBASIC-3.33□□□□□ -2.94
Retrieved 100 of 98,524 protein–RNA pairs in 191.8 ms