Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNA5SP501-201ENST00000410990 112 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 MIR4796-201ENST00000580742 81 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 AC090897.1-201ENST00000580909 226 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 AP000753.3-201ENST00000604083 169 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 RNU6-296P-201ENST00000384608 107 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 SNORD38B-201ENST00000384690 67 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 RNU6-380P-201ENST00000410207 107 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 snoU13.27-201ENST00000459278 104 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 AL773524.1-201ENST00000614065 229 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 SNORD38B-202ENST00000625943 69 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 MIR424-201ENST00000362227 98 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNU6-161P-201ENST00000363051 106 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNU6-112P-201ENST00000363599 104 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNA5SP237-201ENST00000410414 113 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 AC027119.1-201ENST00000440877 241 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 SNRPGP12-201ENST00000449481 213 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNA5SP233-201ENST00000459153 113 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNU6-1015P-201ENST00000517121 99 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 SUB1P4-201ENST00000566062 339 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 MIR5089-201ENST00000580047 84 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 MIR520C-201ENST00000385005 87 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 Y_RNA.648-201ENST00000459455 110 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 RNU6-1108P-201ENST00000516308 104 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 RNU6-850P-201ENST00000516934 103 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 MIR3122-201ENST00000577243 73 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 SNRPGP19-201ENST00000603826 189 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 AL662814.1-201ENST00000617364 121 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 RNU6-949P-201ENST00000384040 107 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 Y_RNA.532-201ENST00000384590 113 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 SNORA48.1-201ENST00000390879 135 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 AC125388.1-201ENST00000459631 156 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 RNU6-871P-201ENST00000516122 100 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 AC138749.4-201ENST00000563970 127 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 MIR4299-201ENST00000577899 72 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 MIR4500-201ENST00000579472 76 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 WWP1P1-201ENST00000466609 2769 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 Y_RNA.340-201ENST00000365330 92 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNA5SP292-201ENST00000390974 118 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC244636.1-201ENST00000421152 228 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC005908.1-201ENST00000468701 347 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNA5SP445-201ENST00000515889 115 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 Y_RNA.660-201ENST00000516002 120 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNA5SP481-201ENST00000516814 122 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNU6-448P-201ENST00000517052 107 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AL627230.6-201ENST00000611129 280 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 MIR4251-201ENST00000635819 61 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 ZNF355P-201ENST00000427301 3216 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 SNORA25.9-201ENST00000365087 128 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 RNU6-811P-201ENST00000384069 107 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 RPL23AP94-201ENST00000512518 302 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 FGF7P7-201ENST00000514120 227 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 AL096840.1-201ENST00000603287 93 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 U8.2-201ENST00000363156 134 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 RNU6-571P-201ENST00000384128 107 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 MIR1265-201ENST00000408444 86 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 MIR4648-201ENST00000580107 72 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 MIR4484-201ENST00000582855 83 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 AC008163.1-202ENST00000636004 2889 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 SNORA72.6-201ENST00000384520 129 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 MIR635-201ENST00000384830 98 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 BX276092.1-201ENST00000427368 251 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 AC023790.1-201ENST00000482174 347 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 RNU7-41P-201ENST00000515917 61 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 RNU6-70P-201ENST00000516438 60 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 RNU6-687P-201ENST00000516443 89 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 SNORA18.5-201ENST00000516616 101 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 AC244023.1-201ENST00000426884 112 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 MIR4536-1-201ENST00000583537 88 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 AC242498.1-201ENST00000604134 111 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 U6.109-201ENST00000636749 87 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 MIR520H-201ENST00000385126 88 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 MIR676-201ENST00000390702 67 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 HSPE1P24-201ENST00000450782 238 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 AC009474.2-201ENST00000451383 136 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 RNU6-634P-201ENST00000459134 106 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 snoU13.2-201ENST00000459201 104 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 RNU6-807P-201ENST00000516805 107 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms