Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNA5SP501-201ENST00000410990 112 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 MIR4796-201ENST00000580742 81 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 AC090897.1-201ENST00000580909 226 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 AP000753.3-201ENST00000604083 169 ntBASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC39Q9UFE4 RNU6-296P-201ENST00000384608 107 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 SNORD38B-201ENST00000384690 67 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 RNU6-380P-201ENST00000410207 107 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 snoU13.27-201ENST00000459278 104 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 AL773524.1-201ENST00000614065 229 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 SNORD38B-202ENST00000625943 69 ntBASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC39Q9UFE4 MIR424-201ENST00000362227 98 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNU6-161P-201ENST00000363051 106 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNU6-112P-201ENST00000363599 104 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNA5SP237-201ENST00000410414 113 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 AC027119.1-201ENST00000440877 241 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 SNRPGP12-201ENST00000449481 213 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNA5SP233-201ENST00000459153 113 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 RNU6-1015P-201ENST00000517121 99 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 SUB1P4-201ENST00000566062 339 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 MIR5089-201ENST00000580047 84 ntBASIC2.23□□□□□ -2.05
CCDC39Q9UFE4 MIR520C-201ENST00000385005 87 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 Y_RNA.648-201ENST00000459455 110 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 RNU6-1108P-201ENST00000516308 104 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 RNU6-850P-201ENST00000516934 103 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 MIR3122-201ENST00000577243 73 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 SNRPGP19-201ENST00000603826 189 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 AL662814.1-201ENST00000617364 121 ntBASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC39Q9UFE4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 RNU6-949P-201ENST00000384040 107 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 Y_RNA.532-201ENST00000384590 113 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 SNORA48.1-201ENST00000390879 135 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 AC125388.1-201ENST00000459631 156 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 RNU6-871P-201ENST00000516122 100 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 AC138749.4-201ENST00000563970 127 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 MIR4299-201ENST00000577899 72 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 MIR4500-201ENST00000579472 76 ntBASIC2.21□□□□□ -2.06
CCDC39Q9UFE4 WWP1P1-201ENST00000466609 2769 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 Y_RNA.340-201ENST00000365330 92 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNA5SP292-201ENST00000390974 118 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC244636.1-201ENST00000421152 228 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC005908.1-201ENST00000468701 347 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNA5SP445-201ENST00000515889 115 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 Y_RNA.660-201ENST00000516002 120 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNA5SP481-201ENST00000516814 122 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 RNU6-448P-201ENST00000517052 107 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AL627230.6-201ENST00000611129 280 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 MIR4251-201ENST00000635819 61 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.2□□□□□ -2.06
CCDC39Q9UFE4 ZNF355P-201ENST00000427301 3216 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 SNORA25.9-201ENST00000365087 128 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 RNU6-811P-201ENST00000384069 107 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 RPL23AP94-201ENST00000512518 302 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 FGF7P7-201ENST00000514120 227 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 AL096840.1-201ENST00000603287 93 ntBASIC2.19□□□□□ -2.06
CCDC39Q9UFE4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 U8.2-201ENST00000363156 134 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 RNU6-571P-201ENST00000384128 107 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 MIR1265-201ENST00000408444 86 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 MIR4648-201ENST00000580107 72 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 MIR4484-201ENST00000582855 83 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 AC008163.1-202ENST00000636004 2889 ntBASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC39Q9UFE4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 SNORA72.6-201ENST00000384520 129 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 MIR635-201ENST00000384830 98 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 BX276092.1-201ENST00000427368 251 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 AC023790.1-201ENST00000482174 347 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 RNU7-41P-201ENST00000515917 61 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 RNU6-70P-201ENST00000516438 60 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 RNU6-687P-201ENST00000516443 89 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 SNORA18.5-201ENST00000516616 101 ntBASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC39Q9UFE4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 AC244023.1-201ENST00000426884 112 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 MIR4536-1-201ENST00000583537 88 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 AC242498.1-201ENST00000604134 111 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 U6.109-201ENST00000636749 87 ntBASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.16□□□□□ -2.06
CCDC39Q9UFE4 MIR520H-201ENST00000385126 88 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 MIR676-201ENST00000390702 67 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 HSPE1P24-201ENST00000450782 238 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 AC009474.2-201ENST00000451383 136 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 RNU6-634P-201ENST00000459134 106 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 snoU13.2-201ENST00000459201 104 ntBASIC2.15□□□□□ -2.07
CCDC39Q9UFE4 RNU6-807P-201ENST00000516805 107 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 211.2 ms