Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 MIR513A2-201ENST00000385249 127 ntBASIC5.06□□□□□ -1.6
SENP3Q9H4L4 U1.36-201ENST00000620684 176 ntBASIC5.06□□□□□ -1.6
SENP3Q9H4L4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC5.05□□□□□ -1.6
SENP3Q9H4L4 Y_RNA.282-201ENST00000364793 102 ntBASIC5.05□□□□□ -1.6
SENP3Q9H4L4 Y_RNA.633-201ENST00000459107 95 ntBASIC5.05□□□□□ -1.6
SENP3Q9H4L4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SENP3Q9H4L4 MIR4460-201ENST00000577862 86 ntBASIC5.04□□□□□ -1.6
SENP3Q9H4L4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SENP3Q9H4L4 LINC02471-203ENST00000641941 4752 ntBASIC5.04□□□□□ -1.6
SENP3Q9H4L4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SENP3Q9H4L4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.03□□□□□ -1.6
SENP3Q9H4L4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SENP3Q9H4L4 RNU6-246P-201ENST00000384702 107 ntBASIC5.02□□□□□ -1.61
SENP3Q9H4L4 RNU1-123P-201ENST00000458950 160 ntBASIC5.02□□□□□ -1.61
SENP3Q9H4L4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SENP3Q9H4L4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SENP3Q9H4L4 MIR422A-201ENST00000362286 90 ntBASIC5.01□□□□□ -1.61
SENP3Q9H4L4 RNU6-721P-201ENST00000410155 105 ntBASIC5.01□□□□□ -1.61
SENP3Q9H4L4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC5.01□□□□□ -1.61
SENP3Q9H4L4 AC067863.3-201ENST00000624172 122 ntBASIC5.01□□□□□ -1.61
SENP3Q9H4L4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC5.01□□□□□ -1.61
SENP3Q9H4L4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
SENP3Q9H4L4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SENP3Q9H4L4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SENP3Q9H4L4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SENP3Q9H4L4 RNU6-250P-201ENST00000516958 103 ntBASIC5□□□□□ -1.61
SENP3Q9H4L4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
SENP3Q9H4L4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC5□□□□□ -1.61
SENP3Q9H4L4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5□□□□□ -1.61
SENP3Q9H4L4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3Q9H4L4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3Q9H4L4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SENP3Q9H4L4 SNORA31.14-201ENST00000516728 116 ntBASIC4.99□□□□□ -1.61
SENP3Q9H4L4 AC012531.5-201ENST00000611375 151 ntBASIC4.99□□□□□ -1.61
SENP3Q9H4L4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3Q9H4L4 Y_RNA.32-201ENST00000362589 110 ntBASIC4.98□□□□□ -1.61
SENP3Q9H4L4 SNORA44-201ENST00000384584 132 ntBASIC4.98□□□□□ -1.61
SENP3Q9H4L4 AL161935.2-201ENST00000414627 60 ntBASIC4.98□□□□□ -1.61
SENP3Q9H4L4 MIR4676-201ENST00000583078 72 ntBASIC4.98□□□□□ -1.61
SENP3Q9H4L4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SENP3Q9H4L4 MIR7154-201ENST00000620673 73 ntBASIC4.98□□□□□ -1.61
SENP3Q9H4L4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SENP3Q9H4L4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.97□□□□□ -1.61
SENP3Q9H4L4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SENP3Q9H4L4 RNU7-102P-201ENST00000458948 62 ntBASIC4.97□□□□□ -1.61
SENP3Q9H4L4 RN7SL93P-201ENST00000463035 293 ntBASIC4.97□□□□□ -1.61
SENP3Q9H4L4 MIR4276-201ENST00000584832 70 ntBASIC4.97□□□□□ -1.61
SENP3Q9H4L4 MIR7851-201ENST00000610611 160 ntBASIC4.97□□□□□ -1.61
SENP3Q9H4L4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.97□□□□□ -1.61
SENP3Q9H4L4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SENP3Q9H4L4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.97□□□□□ -1.61
SENP3Q9H4L4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SENP3Q9H4L4 SNORD28-201ENST00000384706 75 ntBASIC4.96□□□□□ -1.62
SENP3Q9H4L4 RNA5SP94-201ENST00000516917 108 ntBASIC4.96□□□□□ -1.62
SENP3Q9H4L4 AC027335.2-201ENST00000624030 375 ntBASIC4.96□□□□□ -1.62
SENP3Q9H4L4 AC093908.1-201ENST00000623125 8092 ntBASIC4.96□□□□□ -1.62
SENP3Q9H4L4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SENP3Q9H4L4 RN7SKP123-201ENST00000410732 291 ntBASIC4.95□□□□□ -1.62
SENP3Q9H4L4 AL021921.1-201ENST00000442774 93 ntBASIC4.95□□□□□ -1.62
SENP3Q9H4L4 RNU6-237P-201ENST00000515985 71 ntBASIC4.95□□□□□ -1.62
SENP3Q9H4L4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SENP3Q9H4L4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC4.95□□□□□ -1.62
SENP3Q9H4L4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SENP3Q9H4L4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SENP3Q9H4L4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SENP3Q9H4L4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SENP3Q9H4L4 RNU6-742P-201ENST00000365289 107 ntBASIC4.94□□□□□ -1.62
SENP3Q9H4L4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SENP3Q9H4L4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SENP3Q9H4L4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.94□□□□□ -1.62
SENP3Q9H4L4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SENP3Q9H4L4 SCN1A-220ENST00000641603 12506 ntBASIC4.94□□□□□ -1.62
SENP3Q9H4L4 MIR938-201ENST00000401216 83 ntBASIC4.93□□□□□ -1.62
SENP3Q9H4L4 RNA5SP306-201ENST00000411087 107 ntBASIC4.93□□□□□ -1.62
SENP3Q9H4L4 MIR4769-201ENST00000584126 77 ntBASIC4.93□□□□□ -1.62
SENP3Q9H4L4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SENP3Q9H4L4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SENP3Q9H4L4 SNORD113.3-201ENST00000364630 78 ntBASIC4.92□□□□□ -1.62
SENP3Q9H4L4 SNORA54-201ENST00000384281 123 ntBASIC4.92□□□□□ -1.62
SENP3Q9H4L4 MIR758-201ENST00000390227 88 ntBASIC4.92□□□□□ -1.62
SENP3Q9H4L4 RNU6-518P-201ENST00000516056 96 ntBASIC4.92□□□□□ -1.62
SENP3Q9H4L4 AL360157.1-201ENST00000565962 87 ntBASIC4.92□□□□□ -1.62
SENP3Q9H4L4 MIR4425-201ENST00000580572 84 ntBASIC4.92□□□□□ -1.62
SENP3Q9H4L4 CYP3A54P-201ENST00000566950 75 ntBASIC4.91□□□□□ -1.62
SENP3Q9H4L4 MIR5004-201ENST00000579078 107 ntBASIC4.91□□□□□ -1.62
SENP3Q9H4L4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC4.91□□□□□ -1.62
SENP3Q9H4L4 MIR7843-201ENST00000622274 79 ntBASIC4.91□□□□□ -1.62
SENP3Q9H4L4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SENP3Q9H4L4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SENP3Q9H4L4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SENP3Q9H4L4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
SENP3Q9H4L4 MIR591-201ENST00000385290 95 ntBASIC4.9□□□□□ -1.63
SENP3Q9H4L4 RPS26P5-201ENST00000418544 335 ntBASIC4.9□□□□□ -1.63
SENP3Q9H4L4 uc_338.16-201ENST00000621804 95 ntBASIC4.9□□□□□ -1.63
SENP3Q9H4L4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SENP3Q9H4L4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC4.9□□□□□ -1.63
SENP3Q9H4L4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.89□□□□□ -1.63
SENP3Q9H4L4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SENP3Q9H4L4 SNORA63.6-201ENST00000364921 119 ntBASIC4.89□□□□□ -1.63
SENP3Q9H4L4 RNU6-1206P-201ENST00000516339 103 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms