Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC011753.1-201ENST00000451001 220 ntBASIC3.78□□□□□ -1.8
CCDC61Q9Y6R9 SNORA4-201ENST00000584302 138 ntBASIC3.78□□□□□ -1.8
CCDC61Q9Y6R9 MIR6817-201ENST00000615588 66 ntBASIC3.78□□□□□ -1.8
CCDC61Q9Y6R9 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC61Q9Y6R9 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC61Q9Y6R9 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
CCDC61Q9Y6R9 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
CCDC61Q9Y6R9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC61Q9Y6R9 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC61Q9Y6R9 BX510359.4-201ENST00000423750 193 ntBASIC3.77□□□□□ -1.81
CCDC61Q9Y6R9 AC104389.3-201ENST00000445629 235 ntBASIC3.77□□□□□ -1.81
CCDC61Q9Y6R9 UQCRHP3-201ENST00000451503 251 ntBASIC3.77□□□□□ -1.81
CCDC61Q9Y6R9 SUB1P4-201ENST00000566062 339 ntBASIC3.77□□□□□ -1.81
CCDC61Q9Y6R9 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
CCDC61Q9Y6R9 MIR424-201ENST00000362227 98 ntBASIC3.76□□□□□ -1.81
CCDC61Q9Y6R9 Y_RNA.239-201ENST00000364444 113 ntBASIC3.76□□□□□ -1.81
CCDC61Q9Y6R9 AL138878.1-201ENST00000405131 347 ntBASIC3.76□□□□□ -1.81
CCDC61Q9Y6R9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC61Q9Y6R9 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
CCDC61Q9Y6R9 AP006437.1-201ENST00000641440 3685 ntBASIC3.76□□□□□ -1.81
CCDC61Q9Y6R9 AC009487.2-201ENST00000420969 6821 ntBASIC3.76□□□□□ -1.81
CCDC61Q9Y6R9 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 Z98941.1-201ENST00000407764 100 ntBASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 Y_RNA.606-201ENST00000410579 103 ntBASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 AL159169.1-201ENST00000421119 127 ntBASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 snoU13.27-201ENST00000459278 104 ntBASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 RNU7-106P-201ENST00000459514 67 ntBASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 RNU6-977P-201ENST00000516411 103 ntBASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 AL449363.1-201ENST00000617815 186 ntBASIC3.75□□□□□ -1.81
CCDC61Q9Y6R9 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
CCDC61Q9Y6R9 SNORD115-22-201ENST00000364456 82 ntBASIC3.74□□□□□ -1.81
CCDC61Q9Y6R9 RNU6-805P-201ENST00000365643 106 ntBASIC3.74□□□□□ -1.81
CCDC61Q9Y6R9 MIR588-201ENST00000384900 83 ntBASIC3.74□□□□□ -1.81
CCDC61Q9Y6R9 RNA5SP148-201ENST00000516527 94 ntBASIC3.74□□□□□ -1.81
CCDC61Q9Y6R9 AC092435.3-201ENST00000565538 3654 ntBASIC3.74□□□□□ -1.81
CCDC61Q9Y6R9 MIR26A1-201ENST00000362205 77 ntBASIC3.73□□□□□ -1.81
CCDC61Q9Y6R9 SNORD63B-201ENST00000411005 70 ntBASIC3.73□□□□□ -1.81
CCDC61Q9Y6R9 RPS27P16-201ENST00000425758 201 ntBASIC3.73□□□□□ -1.81
CCDC61Q9Y6R9 AC003982.1-202ENST00000469928 248 ntBASIC3.73□□□□□ -1.81
CCDC61Q9Y6R9 AC099513.1-201ENST00000490423 301 ntBASIC3.73□□□□□ -1.81
CCDC61Q9Y6R9 RNA5SP481-201ENST00000516814 122 ntBASIC3.73□□□□□ -1.81
CCDC61Q9Y6R9 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 SNORD116-24-201ENST00000384549 92 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 RNU11-3P-201ENST00000391111 133 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 RNA5SP508-201ENST00000411327 119 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 ARF4P2-201ENST00000430209 526 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 RN7SL330P-201ENST00000469709 307 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 RNU1-41P-201ENST00000516161 162 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 RNU6-1194P-201ENST00000516208 104 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 RNU1-48P-201ENST00000516400 162 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 RNA5SP437-201ENST00000517249 129 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 ZNF209P-201ENST00000593450 2304 ntBASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
CCDC61Q9Y6R9 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
CCDC61Q9Y6R9 SNORD113.1-201ENST00000363280 73 ntBASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 SNORD21-201ENST00000383953 95 ntBASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 RNA5SP293-201ENST00000410527 113 ntBASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 AC104332.2-201ENST00000429959 156 ntBASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 RNA5SP445-201ENST00000515889 115 ntBASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 RNA5SP282-201ENST00000516355 108 ntBASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 RNA5SP137-201ENST00000516833 135 ntBASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC61Q9Y6R9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 AC016717.2-201ENST00000609089 5141 ntBASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 RNU6-461P-201ENST00000364195 107 ntBASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 RNU6-53P-201ENST00000365367 106 ntBASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 MIR597-201ENST00000384968 97 ntBASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 AC244023.1-201ENST00000426884 112 ntBASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 AC242498.1-201ENST00000604134 111 ntBASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC61Q9Y6R9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CCDC61Q9Y6R9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CCDC61Q9Y6R9 MIR563-201ENST00000385080 79 ntBASIC3.69□□□□□ -1.82
CCDC61Q9Y6R9 AC009474.2-201ENST00000451383 136 ntBASIC3.69□□□□□ -1.82
CCDC61Q9Y6R9 AC245166.1-201ENST00000521012 253 ntBASIC3.69□□□□□ -1.82
CCDC61Q9Y6R9 U4.3-201ENST00000621047 82 ntBASIC3.69□□□□□ -1.82
CCDC61Q9Y6R9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC61Q9Y6R9 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC61Q9Y6R9 HMGN2P35-201ENST00000412164 270 ntBASIC3.68□□□□□ -1.82
CCDC61Q9Y6R9 RN7SL75P-201ENST00000461926 281 ntBASIC3.68□□□□□ -1.82
CCDC61Q9Y6R9 AC097510.1-201ENST00000510945 133 ntBASIC3.68□□□□□ -1.82
CCDC61Q9Y6R9 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC61Q9Y6R9 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC61Q9Y6R9 AC108206.1-201ENST00000570186 4159 ntBASIC3.67□□□□□ -1.82
CCDC61Q9Y6R9 RNU4-58P-201ENST00000363192 141 ntBASIC3.67□□□□□ -1.82
CCDC61Q9Y6R9 MIR1261-201ENST00000408659 82 ntBASIC3.67□□□□□ -1.82
CCDC61Q9Y6R9 RPS29P6-201ENST00000438196 145 ntBASIC3.67□□□□□ -1.82
CCDC61Q9Y6R9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC61Q9Y6R9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
CCDC61Q9Y6R9 MIR148B-201ENST00000362252 99 ntBASIC3.66□□□□□ -1.82
CCDC61Q9Y6R9 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CCDC61Q9Y6R9 SNORA40.6-201ENST00000391153 128 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 318.3 ms