Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-830P-201ENST00000516353 107 ntBASIC0.57□□□□□ -2.32
CDX2Q99626 SCARNA15-202ENST00000516881 127 ntBASIC0.57□□□□□ -2.32
CDX2Q99626 RNU6-365P-201ENST00000517113 106 ntBASIC0.57□□□□□ -2.32
CDX2Q99626 MIR4431-201ENST00000579990 94 ntBASIC0.57□□□□□ -2.32
CDX2Q99626 MIR4764-201ENST00000580680 88 ntBASIC0.57□□□□□ -2.32
CDX2Q99626 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.57□□□□□ -2.32
CDX2Q99626 MTND1P7-201ENST00000632801 297 ntBASIC0.57□□□□□ -2.32
CDX2Q99626 SNORD115-28-201ENST00000363931 81 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-151P-201ENST00000364158 107 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-309P-201ENST00000364573 106 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 Y_RNA.270-201ENST00000364693 104 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU4-11P-201ENST00000365287 132 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 SNORD24-201ENST00000383884 75 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-209P-201ENST00000384118 107 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 Y_RNA.440-201ENST00000384120 114 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 Y_RNA.497-201ENST00000384447 98 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-125P-201ENST00000384505 107 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 Y_RNA.525-201ENST00000384570 113 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 MIR136-201ENST00000385207 82 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-847P-201ENST00000411115 108 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RPS3AP1-201ENST00000413190 320 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 AC114737.2-201ENST00000421583 173 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 AL035398.1-201ENST00000430869 322 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.56□□□□□ -2.32
CDX2Q99626 Y_RNA.662-201ENST00000516028 97 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNA5SP153-201ENST00000516498 76 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-1258P-201ENST00000516911 111 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-182P-201ENST00000516970 105 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 RNU6-958P-201ENST00000516995 106 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 AP003327.1-201ENST00000529684 127 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 AP003484.1-201ENST00000530974 250 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 MIR5589-201ENST00000579442 60 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 MIR5688-201ENST00000580619 83 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 MIR4791-201ENST00000607666 84 ntBASIC0.56□□□□□ -2.32
CDX2Q99626 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CDX2Q99626 Y_RNA.52-201ENST00000362760 96 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 Y_RNA.180-201ENST00000363867 113 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 Y_RNA.241-201ENST00000364470 117 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU6-312P-201ENST00000364629 107 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU4-16P-201ENST00000364737 141 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNY3P5-201ENST00000384127 102 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 Y_RNA.521-201ENST00000384560 114 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 Y_RNA.549-201ENST00000384657 102 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 MIR520C-201ENST00000385005 87 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 MIR569-201ENST00000385228 96 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 MIR802-201ENST00000390235 94 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU6-239P-201ENST00000390990 99 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU2-55P-201ENST00000411146 174 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.55□□□□□ -2.32
CDX2Q99626 AC244023.1-201ENST00000426884 112 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 snoU13.19-201ENST00000459148 104 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 Y_RNA.651-201ENST00000459380 103 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 SNORA25.12-201ENST00000516202 82 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU6-426P-201ENST00000516464 97 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU6-504P-201ENST00000516568 104 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU6-1149P-201ENST00000516810 97 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 IGKV1-22-201ENST00000524313 326 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 AC242498.1-201ENST00000604134 111 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 AC108081.1-201ENST00000604358 221 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 AL353765.1-201ENST00000605514 183 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 SEPT14P17-201ENST00000617978 177 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 AC243994.1-201ENST00000618627 109 ntBASIC0.55□□□□□ -2.32
CDX2Q99626 RNU6-1335P-201ENST00000365426 107 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 Y_RNA.370-201ENST00000365589 108 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 SNORD38C-201ENST00000384381 69 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 Y_RNA.542-201ENST00000384641 111 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 Y_RNA.555-201ENST00000384673 110 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 SNORA26.6-201ENST00000391256 115 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 MIR942-201ENST00000401111 86 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 SUMO1P3-201ENST00000439961 304 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 RNU7-200P-201ENST00000516105 62 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 RNA5SP236-201ENST00000516169 116 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 Y_RNA.700-201ENST00000516806 100 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 MIR3133-201ENST00000583157 78 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 AC087685.1-201ENST00000587507 141 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 AC098479.1-201ENST00000609225 154 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.54□□□□□ -2.32
CDX2Q99626 MIR6516-201ENST00000630554 81 ntBASIC0.54□□□□□ -2.32
CDX2Q99626 RNU6-1189P-201ENST00000383958 107 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 SNORA27-201ENST00000384323 126 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 SNORD12C-201ENST00000386307 89 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 MT-TI-201ENST00000387365 69 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 Y_RNA.580-201ENST00000391004 95 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 HMGN2P32-201ENST00000444648 269 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AL392103.1-201ENST00000447000 198 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AC023449.1-201ENST00000454464 154 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.53□□□□□ -2.32
CDX2Q99626 AC023827.1-201ENST00000569247 97 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 MIR4802-201ENST00000581881 80 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 MIR5197-201ENST00000583721 112 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AC131055.1-201ENST00000584626 316 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AL365205.2-201ENST00000594586 68 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 MIR8055-201ENST00000610739 97 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AC134878.1-201ENST00000619901 243 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 Y_RNA.778-201ENST00000620203 90 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AC091932.4-201ENST00000623386 200 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 MIR4251-201ENST00000635819 61 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 MIR6844-201ENST00000637122 62 ntBASIC0.53□□□□□ -2.32
CDX2Q99626 AL596211.1-201ENST00000569873 2277 ntBASIC0.53□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 165.3 ms