Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU6-1234P-201ENST00000516877 103 ntBASIC1.47□□□□□ -2.17
SMARCA1P28370 RNU6-1258P-201ENST00000516911 111 ntBASIC1.47□□□□□ -2.17
SMARCA1P28370 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.47□□□□□ -2.17
SMARCA1P28370 MIR3152-201ENST00000579801 74 ntBASIC1.47□□□□□ -2.17
SMARCA1P28370 MIR4305-201ENST00000583252 102 ntBASIC1.47□□□□□ -2.17
SMARCA1P28370 AC242498.1-201ENST00000604134 111 ntBASIC1.47□□□□□ -2.17
SMARCA1P28370 AL157834.3-201ENST00000615543 103 ntBASIC1.47□□□□□ -2.17
SMARCA1P28370 Y_RNA.191-201ENST00000363972 113 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RNU6-647P-201ENST00000364243 107 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RNU6-939P-201ENST00000384634 107 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RNU6-959P-201ENST00000384671 107 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RNA5SP261-201ENST00000410536 106 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 Y_RNA.617-201ENST00000410920 90 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RPS3AP1-201ENST00000413190 320 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RN7SKP19-201ENST00000516016 252 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RNU2-35P-201ENST00000516446 142 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 SNORA4-201ENST00000584302 138 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 AC021443.1-201ENST00000604478 211 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 MIR6504-201ENST00000613520 61 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 AL137067.1-201ENST00000615933 120 ntBASIC1.46□□□□□ -2.18
SMARCA1P28370 RNA5SP327-201ENST00000362494 101 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 SNORA22.1-201ENST00000362701 134 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 Y_RNA.71-201ENST00000362892 104 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 Y_RNA.171-201ENST00000363760 102 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 RNU6-654P-201ENST00000364373 107 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 RNU6-910P-201ENST00000390844 107 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 SNORA75.2-201ENST00000391138 150 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 SNORA75.3-201ENST00000391231 150 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 RNU7-107P-201ENST00000459121 61 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 RNU6-781P-201ENST00000516377 101 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 RNU11-2P-201ENST00000516898 142 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 RNU6-789P-201ENST00000517105 102 ntBASIC1.45□□□□□ -2.18
SMARCA1P28370 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.45□□□□□ -2.18
SMARCA1P28370 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.45□□□□□ -2.18
SMARCA1P28370 RNU6-396P-201ENST00000365369 105 ntBASIC1.44□□□□□ -2.18
SMARCA1P28370 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.44□□□□□ -2.18
SMARCA1P28370 AL512326.2-201ENST00000426359 151 ntBASIC1.44□□□□□ -2.18
SMARCA1P28370 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.44□□□□□ -2.18
SMARCA1P28370 AL157777.2-201ENST00000258070 137 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 Y_RNA.525-201ENST00000384570 113 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 SNORD38B-201ENST00000384690 67 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 SNORD12C-201ENST00000386307 89 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.43□□□□□ -2.18
SMARCA1P28370 RNU7-164P-201ENST00000459221 62 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 MIR2115-201ENST00000516657 100 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 AC019288.1-201ENST00000557918 224 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 SNORD38B-202ENST00000625943 69 ntBASIC1.43□□□□□ -2.18
SMARCA1P28370 SNORA25.8-201ENST00000364831 128 ntBASIC1.42□□□□□ -2.18
SMARCA1P28370 Y_RNA.298-201ENST00000364960 107 ntBASIC1.42□□□□□ -2.18
SMARCA1P28370 RNU6-80P-201ENST00000384195 107 ntBASIC1.42□□□□□ -2.18
SMARCA1P28370 RNA5SP95-201ENST00000410319 137 ntBASIC1.42□□□□□ -2.18
SMARCA1P28370 MIR4452-201ENST00000583004 71 ntBASIC1.42□□□□□ -2.18
SMARCA1P28370 SEPT14P17-201ENST00000617978 177 ntBASIC1.42□□□□□ -2.18
SMARCA1P28370 SNORD113-1-201ENST00000365321 69 ntBASIC1.41□□□□□ -2.18
SMARCA1P28370 RNU7-123P-201ENST00000515911 60 ntBASIC1.41□□□□□ -2.18
SMARCA1P28370 SNORD79.1-201ENST00000516069 84 ntBASIC1.41□□□□□ -2.18
SMARCA1P28370 RNA5SP480-201ENST00000516840 109 ntBASIC1.41□□□□□ -2.18
SMARCA1P28370 SNORA70.22-201ENST00000517160 124 ntBASIC1.41□□□□□ -2.18
SMARCA1P28370 MIR6078-201ENST00000611069 100 ntBASIC1.41□□□□□ -2.18
SMARCA1P28370 Y_RNA.330-201ENST00000365230 109 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 Y_RNA.354-201ENST00000365448 111 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 SNORA25-201ENST00000384384 134 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNU6-1104P-201ENST00000384723 104 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNU6-205P-201ENST00000390858 107 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 MIR1276-201ENST00000408707 83 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNU6-613P-201ENST00000410412 108 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 AL022718.1-201ENST00000412004 84 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNU6-893P-201ENST00000458841 100 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNU7-21P-201ENST00000459430 62 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNU6-659P-201ENST00000516454 104 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNU6-1061P-201ENST00000516530 99 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 RNY4P20-201ENST00000516678 93 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 AC004812.1-201ENST00000540773 146 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 AL365222.1-201ENST00000614661 98 ntBASIC1.4□□□□□ -2.19
SMARCA1P28370 Y_RNA.470-201ENST00000384307 117 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 SNORA80D-201ENST00000384488 135 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 Y_RNA.531-201ENST00000384589 121 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 MIR618-201ENST00000385287 98 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 MT-TN-201ENST00000387400 73 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 MIR1263-201ENST00000408324 86 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 Y_RNA.630-201ENST00000411370 108 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 AL606753.1-201ENST00000427435 87 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 RNU6-772P-201ENST00000516042 105 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 AC022523.2-201ENST00000561045 150 ntBASIC1.39□□□□□ -2.19
SMARCA1P28370 Y_RNA.261-201ENST00000364631 102 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 SNORD58C-201ENST00000365223 64 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 SNORD116-14-201ENST00000383894 92 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 SNORD116-17-201ENST00000383929 92 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 SNORD116-15-201ENST00000384445 92 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 SNORD116-19-201ENST00000384729 92 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 MIRLET7F2-201ENST00000385277 83 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 AL591704.2-201ENST00000421658 181 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 RNU7-113P-201ENST00000459273 62 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 MIR4264-201ENST00000583520 66 ntBASIC1.38□□□□□ -2.19
SMARCA1P28370 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.38□□□□□ -2.19
SMARCA1P28370 SNORD115-2-201ENST00000362842 82 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 Y_RNA.127-201ENST00000363386 109 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 SNORD115-20-201ENST00000365099 82 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 SNORA19-201ENST00000384737 128 ntBASIC1.37□□□□□ -2.19
SMARCA1P28370 MIR588-201ENST00000384900 83 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms