Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORA31.10-201ENST00000516482 106 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 RNU7-53P-201ENST00000516705 60 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 RNA5SP137-201ENST00000516833 135 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 DNAJC19P9-201ENST00000555084 351 ntBASIC2.54□□□□□ -2
CCDC39Q9UFE4 RNU6-833P-201ENST00000363486 107 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 RNU6-1244P-201ENST00000363614 108 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 RNU6-457P-201ENST00000363999 107 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 U8.16-201ENST00000391279 133 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 RNA5SP261-201ENST00000410536 106 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 RNU7-67P-201ENST00000459003 62 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 MIR3169-201ENST00000578032 83 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 MIR4791-201ENST00000607666 84 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 AC022202.1-201ENST00000613515 211 ntBASIC2.53□□□□□ -2
CCDC39Q9UFE4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 AL596028.1-201ENST00000326971 197 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 RNA5SP289-201ENST00000362332 137 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 SNORA24-201ENST00000384096 131 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 SNORA67.4-201ENST00000384688 142 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 MIR206-201ENST00000384872 86 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 AL161932.1-201ENST00000437408 146 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 RPS29P29-201ENST00000456396 171 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 RNU7-193P-201ENST00000516723 65 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 RNU1-40P-201ENST00000516816 164 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 RNU1-97P-201ENST00000516872 164 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 SNORD53-201ENST00000579969 78 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 AL020996.3-201ENST00000606617 222 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 AC145423.2-201ENST00000610631 239 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 AC022513.1-201ENST00000624512 117 ntBASIC2.52□□□□□ -2.01
CCDC39Q9UFE4 MIR34C-201ENST00000384831 77 ntBASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 MIR516B2-201ENST00000385190 85 ntBASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 RNU6-913P-201ENST00000390913 95 ntBASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 RNU6-613P-201ENST00000410412 108 ntBASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 RPL31P63-201ENST00000422565 375 ntBASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 AC025033.1-201ENST00000463883 194 ntBASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 AC093729.1-201ENST00000513074 128 ntBASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CCDC39Q9UFE4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 Y_RNA.567-201ENST00000384736 106 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 MIR519C-201ENST00000385053 87 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 MIR221-201ENST00000385135 110 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 MIR634-201ENST00000385208 97 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 SNORD23.1-201ENST00000408212 104 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 SNORA11.4-201ENST00000408823 129 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 RPS29P28-201ENST00000446439 141 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 MIR4672-201ENST00000583126 81 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 MIR4448-201ENST00000584360 86 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 MIR6132-201ENST00000622083 109 ntBASIC2.5□□□□□ -2.01
CCDC39Q9UFE4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 RNU6-23P-201ENST00000363283 107 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 SNORA6-201ENST00000384033 151 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 RNU6-342P-201ENST00000384521 104 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 RNU7-73P-201ENST00000458743 63 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 RNA5SP200-201ENST00000516360 103 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 RNA5SP168-201ENST00000516642 112 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 RNA5SP364-201ENST00000516938 78 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 SNORD3E-202ENST00000627253 216 ntBASIC2.49□□□□□ -2.01
CCDC39Q9UFE4 MIR29C-201ENST00000385231 88 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 SNORA48.3-201ENST00000391081 134 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 MIR548G-201ENST00000408442 89 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 HSPE1P9-201ENST00000440046 311 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 RNU1-98P-201ENST00000458992 160 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 AC140658.3-201ENST00000567603 271 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 MIR4529-201ENST00000578110 78 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 MIR5002-201ENST00000584713 97 ntBASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC39Q9UFE4 SNORD115-3-201ENST00000363100 82 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 RNU4-53P-201ENST00000410828 140 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 RNU7-12P-201ENST00000516030 62 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 RNU7-35P-201ENST00000517174 62 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 SNORA31.25-201ENST00000517242 134 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 AL513043.2-201ENST00000573941 143 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 AC020891.4-201ENST00000605745 93 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 RNU6-90P-201ENST00000606352 106 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 AC243994.1-201ENST00000618627 109 ntBASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
CCDC39Q9UFE4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.01
CCDC39Q9UFE4 RNA5SP160-201ENST00000364866 120 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 MIR136-201ENST00000385207 82 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 SNORD28B-201ENST00000390993 75 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 HMGN2P39-201ENST00000398005 273 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 AL034345.1-201ENST00000407768 123 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 HMGN1P33-201ENST00000432945 451 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 MIR548AR-201ENST00000582191 57 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 MIR3935-201ENST00000583472 104 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 U7.4-201ENST00000614961 63 ntBASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC39Q9UFE4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 RNU6-1019P-201ENST00000364424 107 ntBASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 Y_RNA.448-201ENST00000384185 108 ntBASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 MIR452-201ENST00000385020 85 ntBASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 AC245047.7-201ENST00000440265 293 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 225.3 ms