Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SNORA27-201ENST00000384323 126 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 MIR517C-201ENST00000385103 95 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 RNU6-922P-201ENST00000516753 99 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 RNU6-1149P-201ENST00000516810 97 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 AC090821.2-201ENST00000523552 176 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 AC024614.2-201ENST00000577584 372 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 MIR151B-201ENST00000584249 96 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 AL357312.1-201ENST00000603879 298 ntBASIC1.91□□□□□ -2.1
SMC1BQ8NDV3 AC010332.2-201ENST00000613083 1904 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.120-201ENST00000363304 110 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 SNORD1A-201ENST00000364968 72 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.440-201ENST00000384120 114 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 MIR520E-201ENST00000384867 87 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 RNU6-460P-201ENST00000391158 108 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 RNU7-80P-201ENST00000459562 61 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 RPS29P1-201ENST00000465274 159 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 SNORA31.24-201ENST00000517232 57 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 AP001328.1-201ENST00000528550 176 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 MIR3937-201ENST00000580135 106 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 AP000648.3-201ENST00000623539 4507 ntBASIC1.9□□□□□ -2.11
SMC1BQ8NDV3 MIR302D-201ENST00000362275 68 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.30-201ENST00000362572 97 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 RNU6-704P-201ENST00000364162 103 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.454-201ENST00000384224 113 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 MIR520C-201ENST00000385005 87 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 TMSB4XP3-201ENST00000445144 114 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 RPS26P48-201ENST00000491713 339 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 MIR548AR-201ENST00000582191 57 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 MTND5P32-201ENST00000560711 1802 ntBASIC1.89□□□□□ -2.11
SMC1BQ8NDV3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.351-201ENST00000365436 96 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 SNORA20-201ENST00000384662 132 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 SNORA40-201ENST00000388090 126 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 RNU4-61P-201ENST00000411243 107 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 RNU7-96P-201ENST00000459535 64 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 RPS29P24-201ENST00000486345 171 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 AC019176.1-201ENST00000518519 225 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 MIR4419B-201ENST00000577260 68 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 MIR4422-201ENST00000581938 83 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 GHRLOS.1-201ENST00000610995 70 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 MIR6788-201ENST00000618842 66 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 AP001340.1-201ENST00000624405 217 ntBASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
SMC1BQ8NDV3 RNY1P11-201ENST00000363759 113 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 RNU6-915P-201ENST00000364943 103 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 SNORD28B-201ENST00000390993 75 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 MIR934-201ENST00000401241 83 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 RNU7-67P-201ENST00000459003 62 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 RNA5SP272-201ENST00000516095 111 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 SNORD111.1-201ENST00000516421 86 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 MIR4764-201ENST00000580680 88 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 MIR376A2-201ENST00000636782 80 ntBASIC1.87□□□□□ -2.11
SMC1BQ8NDV3 U8.1-201ENST00000362843 134 ntBASIC1.86□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.537-201ENST00000384626 109 ntBASIC1.86□□□□□ -2.11
SMC1BQ8NDV3 SNORD41-201ENST00000386967 70 ntBASIC1.86□□□□□ -2.11
SMC1BQ8NDV3 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.86□□□□□ -2.11
SMC1BQ8NDV3 SCARNA15-202ENST00000516881 127 ntBASIC1.86□□□□□ -2.11
SMC1BQ8NDV3 TUG1_4.1-201ENST00000619464 181 ntBASIC1.86□□□□□ -2.11
SMC1BQ8NDV3 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.86□□□□□ -2.11
SMC1BQ8NDV3 MIR302B-201ENST00000362188 73 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 MIR342-201ENST00000362212 99 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 RNU1-133P-201ENST00000364867 167 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 SNORA51.10-201ENST00000384418 136 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 RNU1-78P-201ENST00000391248 165 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 AL603914.1-201ENST00000401964 204 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 AC027119.1-201ENST00000440877 241 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 RPL39P39-201ENST00000455840 151 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 RPS29P29-201ENST00000456396 171 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 RPL30P7-201ENST00000479312 323 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.690-201ENST00000516603 95 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.692-201ENST00000516627 105 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 RNU7-53P-201ENST00000516705 60 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.757-201ENST00000578934 114 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 MIR3618-201ENST00000580330 88 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 U7.2-201ENST00000607576 63 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 AC243994.1-201ENST00000618627 109 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 AC008133.2-201ENST00000624540 351 ntBASIC1.85□□□□□ -2.11
SMC1BQ8NDV3 AL035398.1-201ENST00000430869 322 ntBASIC1.84□□□□□ -2.11
SMC1BQ8NDV3 RNU6-998P-201ENST00000515894 101 ntBASIC1.84□□□□□ -2.11
SMC1BQ8NDV3 RNU6-789P-201ENST00000517105 102 ntBASIC1.84□□□□□ -2.11
SMC1BQ8NDV3 Y_RNA.494-201ENST00000384432 111 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 MIR1323-201ENST00000408090 73 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 MIR548J-201ENST00000408833 112 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 RNU6-257P-201ENST00000410238 98 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 RNU2-13P-201ENST00000515909 113 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 Y_RNA.686-201ENST00000516548 134 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 MIR4791-201ENST00000607666 84 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 AC011603.4-201ENST00000611325 277 ntBASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
SMC1BQ8NDV3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
SMC1BQ8NDV3 MIR539-201ENST00000365690 78 ntBASIC1.82□□□□□ -2.12
SMC1BQ8NDV3 MIR570-201ENST00000384917 97 ntBASIC1.82□□□□□ -2.12
SMC1BQ8NDV3 MTND4LP9-201ENST00000427694 174 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 358.7 ms