Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-915P-201ENST00000364943 103 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-257P-201ENST00000410238 98 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 TMSB4XP3-201ENST00000445144 114 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 Y_RNA.686-201ENST00000516548 134 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 Y_RNA.690-201ENST00000516603 95 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-958P-201ENST00000516995 106 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 MIR4498-201ENST00000577599 66 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 Y_RNA.757-201ENST00000578934 114 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 BX248123.2-201ENST00000606318 124 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 AL096861.1-201ENST00000610899 123 ntBASIC1.51□□□□□ -2.17
PTCHD3Q3KNS1 MIR302B-201ENST00000362188 73 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 MIR570-201ENST00000384917 97 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 Y_RNA.586-201ENST00000391146 98 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 MIR1323-201ENST00000408090 73 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 MTND4LP9-201ENST00000427694 174 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 RNU2-11P-201ENST00000459191 187 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 RNU7-41P-201ENST00000515917 61 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 MIR3192-201ENST00000584920 77 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 snoU13.31-201ENST00000607291 104 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 MIR4251-201ENST00000635819 61 ntBASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
PTCHD3Q3KNS1 MIR539-201ENST00000365690 78 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-997P-201ENST00000384725 107 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 RNA5SP261-201ENST00000410536 106 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-1054P-201ENST00000411293 104 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 AP1B1P2-201ENST00000416196 106 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 DNAJC19P9-201ENST00000555084 351 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 AL022345.2-201ENST00000606307 135 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 AC091895.1-201ENST00000624494 256 ntBASIC1.49□□□□□ -2.17
PTCHD3Q3KNS1 Y_RNA.164-201ENST00000363709 102 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-309P-201ENST00000364573 106 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-60P-201ENST00000364792 103 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-81P-201ENST00000365608 104 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 SNORA20-201ENST00000384662 132 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 SNORA67.6-201ENST00000391093 99 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-1053P-201ENST00000515930 101 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 RNA5SP272-201ENST00000516095 111 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-789P-201ENST00000517105 102 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-165P-201ENST00000517170 99 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 AP003716.2-201ENST00000528260 108 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 MIR8055-201ENST00000610739 97 ntBASIC1.48□□□□□ -2.17
PTCHD3Q3KNS1 AL596211.1-201ENST00000569873 2277 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 MIR342-201ENST00000362212 99 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-349P-201ENST00000362402 107 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 RNY1P6-201ENST00000384193 109 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 RNU1-98P-201ENST00000458992 160 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 RNU7-95P-201ENST00000459222 64 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 Y_RNA.651-201ENST00000459380 103 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 AC023790.1-201ENST00000482174 347 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-947P-201ENST00000516264 106 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 MIR3152-201ENST00000579801 74 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 AL512598.1-201ENST00000610158 273 ntBASIC1.47□□□□□ -2.17
PTCHD3Q3KNS1 Y_RNA.4-201ENST00000362333 112 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 MIR517C-201ENST00000385103 95 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 MIR320A-201ENST00000385302 82 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-1319P-201ENST00000390855 104 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-747P-201ENST00000390928 104 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-241P-201ENST00000391148 104 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-177P-201ENST00000411257 104 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-893P-201ENST00000458841 100 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 SNORA31.4-201ENST00000516049 129 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 RN7SKP88-201ENST00000516847 250 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 RNU11-2P-201ENST00000516898 142 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 MIR3910-1-201ENST00000580936 111 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 AL020996.3-201ENST00000606617 222 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 7SK.8-201ENST00000612110 250 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 7SK.11-201ENST00000615477 250 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 7SK.13-201ENST00000622040 250 ntBASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.46□□□□□ -2.18
PTCHD3Q3KNS1 Y_RNA.280-201ENST00000364765 112 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-913P-201ENST00000390913 95 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 AC009474.2-201ENST00000451383 136 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 snoU13.25-201ENST00000458945 104 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 Y_RNA.676-201ENST00000516393 96 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 MIR548AO-201ENST00000579992 96 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 PRELID3BP2-201ENST00000605362 201 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 Z97988.1-201ENST00000637697 135 ntBASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.45□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-647P-201ENST00000364243 107 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 Y_RNA.430-201ENST00000384081 110 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 RNU4-61P-201ENST00000411243 107 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-406P-201ENST00000516470 107 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 CYP3A52P-201ENST00000563326 91 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 AC021613.1-201ENST00000623880 111 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 AC132825.6-201ENST00000638861 357 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 AP000648.3-201ENST00000623539 4507 ntBASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
PTCHD3Q3KNS1 RNA5SP264-201ENST00000363115 107 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 Y_RNA.114-201ENST00000363265 113 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 SNORA26.6-201ENST00000391256 115 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 246.7 ms