Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR548AO-201ENST00000579992 96 ntBASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
CCDC28AQ8IWP9 Y_RNA.8-201ENST00000362353 102 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 RNA5SP327-201ENST00000362494 101 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 RNU6-151P-201ENST00000364158 107 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 RNU4-11P-201ENST00000365287 132 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 MIR1185-1-201ENST00000408598 86 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 CYCSP49-201ENST00000420810 319 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 AL392103.1-201ENST00000447000 198 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 AC112693.2-201ENST00000556538 232 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 AC091932.4-201ENST00000623386 200 ntBASIC1.34□□□□□ -2.19
CCDC28AQ8IWP9 MTND5P32-201ENST00000560711 1802 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 RNU1-133P-201ENST00000364867 167 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 Y_RNA.497-201ENST00000384447 98 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 SNORA80D-201ENST00000384488 135 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 MIR222-201ENST00000384992 110 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 RPS29P11-201ENST00000496507 171 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 AP000942.3-201ENST00000603702 160 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 AL022345.2-201ENST00000606307 135 ntBASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
CCDC28AQ8IWP9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 RNU6-396P-201ENST00000365369 105 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 Y_RNA.363-201ENST00000365529 113 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 Y_RNA.398-201ENST00000383952 99 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 SNORA25-201ENST00000384384 134 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 MT-TR-201ENST00000387439 65 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 RNU6-913P-201ENST00000390913 95 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 SNORD12-201ENST00000391002 90 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 Y_RNA.584-201ENST00000391090 114 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 MIR1302-7-201ENST00000408841 72 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 AL591704.2-201ENST00000421658 181 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 SNORD79.1-201ENST00000516069 84 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 MIR2115-201ENST00000516657 100 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 RNU6-1212P-201ENST00000517023 104 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 DNAJC19P9-201ENST00000555084 351 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 AL596211.1-201ENST00000569873 2277 ntBASIC1.32□□□□□ -2.2
CCDC28AQ8IWP9 RNU1-42P-201ENST00000364033 160 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 RNA5SP261-201ENST00000410536 106 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 MTATP6P21-201ENST00000440681 189 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 AC023790.1-201ENST00000482174 347 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 AC019288.1-201ENST00000557918 224 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 AL020996.3-201ENST00000606617 222 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 SEPT14P17-201ENST00000617978 177 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 AC021753.1-201ENST00000635724 168 ntBASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC28AQ8IWP9 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 SNORD114-1-201ENST00000362705 72 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 SNORA75.2-201ENST00000391138 150 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 SNORA40.18-201ENST00000391200 128 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 SNORA75.3-201ENST00000391231 150 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 MIR513C-201ENST00000401352 84 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 RPL23AP94-201ENST00000512518 302 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 MIR8055-201ENST00000610739 97 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.3□□□□□ -2.2
CCDC28AQ8IWP9 MIR26B-201ENST00000362251 77 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 SNORA1.1-201ENST00000364671 133 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 SNORD18B-201ENST00000365659 72 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 Y_RNA.400-201ENST00000383963 111 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 MIR9-3-201ENST00000385084 90 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 RNU7-21P-201ENST00000459430 62 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 MIR502-201ENST00000606349 86 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 Z97988.1-201ENST00000637697 135 ntBASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC28AQ8IWP9 SNORA25.8-201ENST00000364831 128 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 RNA5SP126-201ENST00000365092 109 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 Y_RNA.330-201ENST00000365230 109 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 RNU6-613P-201ENST00000410412 108 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 RNU7-90P-201ENST00000459216 62 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 RNA5SP236-201ENST00000516169 116 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 MTND5P41-201ENST00000517498 206 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 AC027335.2-201ENST00000624030 375 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 MIR6516-201ENST00000630554 81 ntBASIC1.28□□□□□ -2.2
CCDC28AQ8IWP9 Y_RNA.120-201ENST00000363304 110 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 Y_RNA.170-201ENST00000363746 110 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 Y_RNA.251-201ENST00000364551 99 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 MT-TN-201ENST00000387400 73 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 MRPL35P3-201ENST00000421557 364 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 AC063976.4-201ENST00000421971 163 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 HMGN1P33-201ENST00000432945 451 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 AC003989.2-201ENST00000440224 169 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 MIR548X2-201ENST00000579776 100 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 MIR3152-201ENST00000579801 74 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 AP000753.3-201ENST00000604083 169 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 AC084768.2-201ENST00000622736 221 ntBASIC1.27□□□□□ -2.21
CCDC28AQ8IWP9 SNORA20-201ENST00000384662 132 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 SNORD38B-201ENST00000384690 67 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-1319P-201ENST00000390855 104 ntBASIC1.26□□□□□ -2.21
CCDC28AQ8IWP9 RNU6-747P-201ENST00000390928 104 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms