Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-389P-201ENST00000517048 105 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 RNA5SP404-201ENST00000517118 132 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 AC036111.3-201ENST00000526389 112 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 AC007751.1-201ENST00000529260 376 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 AC109810.1-201ENST00000534066 224 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 MIR4744-201ENST00000581563 82 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 AC096720.1-201ENST00000604441 183 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 AC078938.1-201ENST00000620993 318 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 MIR4251-201ENST00000635819 61 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 MIR103A2-201ENST00000362154 78 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 MIR342-201ENST00000362212 99 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.83-201ENST00000363005 113 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 RNA5SP257-201ENST00000363023 116 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 RNU6-728P-201ENST00000365375 104 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 RNU6-484P-201ENST00000384016 107 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 SNORA25-201ENST00000384384 134 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 SNORA51.10-201ENST00000384418 136 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 RNU7-67P-201ENST00000459003 62 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 SNORD36C-201ENST00000516733 66 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 AL391903.3-201ENST00000612158 163 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 MIR6767-201ENST00000637302 66 ntBASIC1.05□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.7-201ENST00000362352 102 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 RNU6-379P-201ENST00000363813 104 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.200-201ENST00000364018 102 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 RNU1-133P-201ENST00000364867 167 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 RNU6-1067P-201ENST00000384752 107 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.571-201ENST00000384753 98 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 MIR518F-201ENST00000384973 87 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.618-201ENST00000410949 107 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 AL138752.1-201ENST00000452964 351 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 RNU6-830P-201ENST00000516353 107 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 RNU6-958P-201ENST00000516995 106 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 HSPE1P19-201ENST00000603327 295 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 MIR4791-201ENST00000607666 84 ntBASIC1.04□□□□□ -2.24
PDLIM3Q53GG5 AC008163.1-202ENST00000636004 2889 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 RNA5SP264-201ENST00000363115 107 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 SNORA1.2-201ENST00000365189 134 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 RNU6-47P-201ENST00000383866 107 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 MIR548A2-201ENST00000384956 97 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 RNU6-578P-201ENST00000390980 103 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 SNORA75.2-201ENST00000391138 150 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 SNORA75.3-201ENST00000391231 150 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 RNU6-1054P-201ENST00000411293 104 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AF228730.3-201ENST00000436691 102 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AC107297.1-201ENST00000459991 176 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 RNU6-113P-201ENST00000516653 101 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AC022559.1-201ENST00000520905 205 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AC130289.1-201ENST00000577321 73 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 MIR3129-201ENST00000581095 76 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 MIR3660-201ENST00000584845 100 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AC108706.1-201ENST00000611053 297 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AC243994.1-201ENST00000618627 109 ntBASIC1.03□□□□□ -2.24
PDLIM3Q53GG5 AL589743.1-201ENST00000551932 2712 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.23-201ENST00000362496 106 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.37-201ENST00000362606 108 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 RNU6-103P-201ENST00000363686 107 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 RNU1-124P-201ENST00000363861 145 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 SNORA1-201ENST00000384107 130 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 RNY3P5-201ENST00000384127 102 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.476-201ENST00000384347 108 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 SNORA26-201ENST00000391286 122 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 RNA5SP121-201ENST00000516537 101 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 AC090821.2-201ENST00000523552 176 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 AP003484.1-201ENST00000530974 250 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 AC023827.1-201ENST00000569247 97 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 AL020996.3-201ENST00000606617 222 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 AL109933.3-201ENST00000619095 188 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 AC027335.2-201ENST00000624030 375 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 MIR924-201ENST00000638017 53 ntBASIC1.02□□□□□ -2.25
PDLIM3Q53GG5 MIR411-201ENST00000362239 96 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.66-201ENST00000362862 102 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 RNA5SP48-201ENST00000363969 126 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 RNU6-35P-201ENST00000384530 107 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 SNORA40.6-201ENST00000391153 128 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 SNORD58.1-201ENST00000391313 66 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 MIR1185-1-201ENST00000408598 86 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 RNU6-847P-201ENST00000411115 108 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 RNU2-55P-201ENST00000411146 174 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 AC004223.1-201ENST00000479840 271 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 RPS23P4-201ENST00000487908 423 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 RNU6-197P-201ENST00000516680 100 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 MIR548AO-201ENST00000579992 96 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 AC012676.2-201ENST00000619258 186 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 MTND1P7-201ENST00000632801 297 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 U6.106-201ENST00000636360 105 ntBASIC1.01□□□□□ -2.25
PDLIM3Q53GG5 RNU6-888P-201ENST00000363010 101 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 RNU6-1020P-201ENST00000363684 107 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.274-201ENST00000364714 101 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms