Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SNORD115-12-201ENST00000362583 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-29-201ENST00000362834 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-9-201ENST00000362912 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-21-201ENST00000362963 81 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-14-201ENST00000363090 81 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-13-201ENST00000363358 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-41-201ENST00000363608 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-11-201ENST00000363616 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-5-201ENST00000363633 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-39-201ENST00000363694 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-4-201ENST00000363810 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-16-201ENST00000363887 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-6-201ENST00000363942 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-42-201ENST00000364273 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 Y_RNA.241-201ENST00000364470 117 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-15-201ENST00000364809 81 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-1-201ENST00000364961 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-26-201ENST00000365067 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-10-201ENST00000365073 81 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-43-201ENST00000365503 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-36-201ENST00000365629 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 Y_RNA.393-201ENST00000383936 102 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 Y_RNA.396-201ENST00000383949 103 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD61-201ENST00000384252 73 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 Y_RNA.590-201ENST00000410140 107 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 AC087499.4-201ENST00000448505 178 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 RNU6-693P-201ENST00000516134 107 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 RNU6-365P-201ENST00000517113 106 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.71□□□□□ -2.3
PTPN4P29074 AC012433.1-201ENST00000588916 398 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 SNORD115-40-201ENST00000606510 82 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 RNU6-94P-201ENST00000607728 107 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 AC104465.1-201ENST00000611365 139 ntBASIC0.71□□□□□ -2.3
PTPN4P29074 Y_RNA.37-201ENST00000362606 108 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 Y_RNA.66-201ENST00000362862 102 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 RNU6-888P-201ENST00000363010 101 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 snoU2_19.4-201ENST00000364329 80 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 SNORD113.3-201ENST00000364630 78 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 Y_RNA.304-201ENST00000365011 112 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 RNU6-396P-201ENST00000365369 105 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 RNU6-484P-201ENST00000384016 107 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 RNY3P5-201ENST00000384127 102 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 MIR100-201ENST00000385259 80 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 RNA5SP95-201ENST00000410319 137 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 RNU2-55P-201ENST00000411146 174 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 RNU6-938P-201ENST00000411285 103 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 AC006461.1-201ENST00000412637 326 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 AL358176.2-201ENST00000425769 204 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.7□□□□□ -2.3
PTPN4P29074 AC113410.1-201ENST00000505029 247 ntBASIC0.7□□□□□ -2.3
PTPN4P29074 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.69□□□□□ -2.3
PTPN4P29074 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.69□□□□□ -2.3
PTPN4P29074 Y_RNA.47-201ENST00000362697 108 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 Y_RNA.459-201ENST00000384251 102 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 MIR508-201ENST00000384857 115 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 MIR616-201ENST00000385293 97 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 MT-TT-201ENST00000387460 66 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 RNU6-994P-201ENST00000410507 111 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 AC107297.1-201ENST00000459991 176 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 RNU6-1299P-201ENST00000516316 100 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 Y_RNA.679-201ENST00000516416 91 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 SNORA18.4-201ENST00000516440 124 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 RNU6-1270P-201ENST00000517128 108 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 AP000942.4-201ENST00000604811 241 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 AL353765.1-201ENST00000605514 183 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 AL365265.1-201ENST00000621045 234 ntBASIC0.69□□□□□ -2.3
PTPN4P29074 Y_RNA.91-201ENST00000363042 107 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 Y_RNA.149-201ENST00000363558 117 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 Y_RNA.168-201ENST00000363740 102 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 Y_RNA.634-201ENST00000364811 113 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 RNU6-1335P-201ENST00000365426 107 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 Y_RNA.352-201ENST00000365439 102 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 MT-TN-201ENST00000387400 73 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 SNORA40.5-201ENST00000391061 128 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 AL035398.1-201ENST00000430869 322 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 snoU13.16-201ENST00000459350 104 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 RNU6-504P-201ENST00000516568 104 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 RNU6-453P-201ENST00000516819 85 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 AP003484.1-201ENST00000530974 250 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 MIR4643-201ENST00000577473 78 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 AL590095.2-201ENST00000604136 117 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 AL360085.1-201ENST00000604713 532 ntBASIC0.68□□□□□ -2.3
PTPN4P29074 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
PTPN4P29074 MIR377-201ENST00000362145 69 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 RNU6-653P-201ENST00000363074 106 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 RNU6-1309P-201ENST00000363305 108 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 SNORD45.3-201ENST00000363836 72 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 Y_RNA.432-201ENST00000384087 111 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 SNORA2B-201ENST00000384583 137 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 MIR216A-201ENST00000385063 110 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 SNORD89-201ENST00000390981 114 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 RNU6-381P-201ENST00000391259 108 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 SNORA26-201ENST00000391286 122 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 AL606845.1-201ENST00000404881 255 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 Y_RNA.622-201ENST00000411091 108 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 SNRPGP8-201ENST00000454064 226 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 RNU7-67P-201ENST00000459003 62 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 RNA5SP153-201ENST00000516498 76 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 354.2 ms