Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR378A-201ENST00000362177 66 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.66-201ENST00000362862 102 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.75-201ENST00000362927 97 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 SNORA7.1-201ENST00000363750 139 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.182-201ENST00000363880 111 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 MIR222-201ENST00000384992 110 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 MIR520C-201ENST00000385005 87 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 RNU4-43P-201ENST00000410628 137 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 RNU5E-9P-201ENST00000411164 104 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 snoU13.25-201ENST00000458945 104 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 RNU7-43P-201ENST00000516554 64 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 RNU6-861P-201ENST00000516745 106 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 AC007751.1-201ENST00000529260 376 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 AP000942.3-201ENST00000603702 160 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 AC072026.1-201ENST00000605023 201 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 AC006441.5-201ENST00000612680 209 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 AC027335.2-201ENST00000624030 375 ntBASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.634-201ENST00000364811 113 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 PCNPP3-201ENST00000393579 471 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 RNU2-55P-201ENST00000411146 174 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 AC074198.2-201ENST00000508153 258 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.797-201ENST00000515977 94 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.666-201ENST00000516187 112 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 RNA5SP458-201ENST00000516188 119 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 RNU7-40P-201ENST00000516397 64 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 MRPS18CP4-201ENST00000535821 231 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 MIR4764-201ENST00000580680 88 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 FTX_2.1-201ENST00000618816 94 ntBASIC1.24□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.240-201ENST00000364469 95 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.432-201ENST00000384087 111 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 BTF3P4-201ENST00000418852 495 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 RNU7-41P-201ENST00000515917 61 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 RNU6-830P-201ENST00000516353 107 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 RNU7-25P-201ENST00000516544 62 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 RNU6-197P-201ENST00000516680 100 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 MIR3668-201ENST00000582138 75 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 AL157834.3-201ENST00000615543 103 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 AC015726.2-201ENST00000620112 122 ntBASIC1.23□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.23-201ENST00000362496 106 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 RNU6-728P-201ENST00000365375 104 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.363-201ENST00000365529 113 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 SNORD61-201ENST00000384252 73 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 MIR518F-201ENST00000384973 87 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 MIR618-201ENST00000385287 98 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 MT-TR-201ENST00000387439 65 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 RPS29P28-201ENST00000446439 141 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 AL121914.1-201ENST00000450188 156 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 RNU4-57P-201ENST00000515980 135 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 RNU6-1299P-201ENST00000516316 100 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 RNA5SP153-201ENST00000516498 76 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 MIR4662B-201ENST00000579498 81 ntBASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
LIMA1Q9UHB6 MIR548O-201ENST00000408583 114 ntBASIC1.21□□□□□ -2.22
LIMA1Q9UHB6 AP1B1P2-201ENST00000416196 106 ntBASIC1.21□□□□□ -2.22
LIMA1Q9UHB6 SEPT7P4-201ENST00000437076 306 ntBASIC1.21□□□□□ -2.22
LIMA1Q9UHB6 SNORD79.1-201ENST00000516069 84 ntBASIC1.21□□□□□ -2.22
LIMA1Q9UHB6 RNA5SP404-201ENST00000517118 132 ntBASIC1.21□□□□□ -2.22
LIMA1Q9UHB6 AL353770.2-201ENST00000620024 78 ntBASIC1.21□□□□□ -2.22
LIMA1Q9UHB6 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNU6-888P-201ENST00000363010 101 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 Y_RNA.150-201ENST00000363562 102 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNA5SP48-201ENST00000363969 126 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNU6-978P-201ENST00000364371 103 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNU6-643P-201ENST00000384018 107 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 Y_RNA.547-201ENST00000384654 119 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 SNORD28B-201ENST00000390993 75 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 SNORD12-201ENST00000391002 90 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNU6-237P-201ENST00000515985 71 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNU6-182P-201ENST00000516970 105 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNU6-1270P-201ENST00000517128 108 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 MIR4431-201ENST00000579990 94 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 PRELID3BP2-201ENST00000605362 201 ntBASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
LIMA1Q9UHB6 RNU6-312P-201ENST00000364629 107 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 SNORD24-201ENST00000383884 75 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 SNORA80D-201ENST00000384488 135 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 U8.17-201ENST00000391292 132 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 RNU2-70P-201ENST00000410718 179 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 RNU6-938P-201ENST00000411285 103 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 RNU6-365P-201ENST00000517113 106 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 MIR548AR-201ENST00000582191 57 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 AC008133.2-201ENST00000624540 351 ntBASIC1.19□□□□□ -2.22
LIMA1Q9UHB6 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 RNA5SP264-201ENST00000363115 107 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 SNORA1-201ENST00000384107 130 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 Y_RNA.441-201ENST00000384123 112 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 RNU6-886P-201ENST00000384319 105 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 SNORA75.2-201ENST00000391138 150 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 SNORA75.3-201ENST00000391231 150 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 MIR548I3-201ENST00000408378 149 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 MIR548I1-201ENST00000408810 149 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 189.3 ms