Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNA5SP42-201ENST00000364278 115 ntBASIC3.47□□□□□ -1.85
COL9A1P20849 MIR29C-201ENST00000385231 88 ntBASIC3.47□□□□□ -1.85
COL9A1P20849 RN7SL863P-201ENST00000462370 296 ntBASIC3.47□□□□□ -1.85
COL9A1P20849 RNU6-917P-201ENST00000516294 104 ntBASIC3.47□□□□□ -1.85
COL9A1P20849 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC3.47□□□□□ -1.85
COL9A1P20849 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL9A1P20849 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
COL9A1P20849 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL9A1P20849 RNU1-58P-201ENST00000362413 163 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 RNU1-18P-201ENST00000363062 164 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 Y_RNA.340-201ENST00000365330 92 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 RNU1-109P-201ENST00000383960 147 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 MIR489-201ENST00000384923 84 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 RPS29P12-201ENST00000460178 152 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 MIR4727-201ENST00000622232 55 ntBASIC3.46□□□□□ -1.86
COL9A1P20849 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL9A1P20849 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL9A1P20849 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL9A1P20849 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
COL9A1P20849 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
COL9A1P20849 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.46□□□□□ -1.86
COL9A1P20849 AC092435.3-201ENST00000565538 3654 ntBASIC3.45□□□□□ -1.86
COL9A1P20849 SNORA25.9-201ENST00000365087 128 ntBASIC3.45□□□□□ -1.86
COL9A1P20849 RNU6-987P-201ENST00000384759 104 ntBASIC3.45□□□□□ -1.86
COL9A1P20849 RPS29P11-201ENST00000496507 171 ntBASIC3.45□□□□□ -1.86
COL9A1P20849 MIR3134-201ENST00000579433 74 ntBASIC3.45□□□□□ -1.86
COL9A1P20849 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC3.45□□□□□ -1.86
COL9A1P20849 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.45□□□□□ -1.86
COL9A1P20849 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.45□□□□□ -1.86
COL9A1P20849 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.45□□□□□ -1.86
COL9A1P20849 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.45□□□□□ -1.86
COL9A1P20849 SNORA63.2-201ENST00000362603 126 ntBASIC3.44□□□□□ -1.86
COL9A1P20849 RPS26P15-201ENST00000488067 348 ntBASIC3.44□□□□□ -1.86
COL9A1P20849 RNA5SP24-201ENST00000516478 95 ntBASIC3.44□□□□□ -1.86
COL9A1P20849 AP000753.3-201ENST00000604083 169 ntBASIC3.44□□□□□ -1.86
COL9A1P20849 U6.98-201ENST00000637157 84 ntBASIC3.44□□□□□ -1.86
COL9A1P20849 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
COL9A1P20849 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
COL9A1P20849 RNU4-37P-201ENST00000410214 84 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 EEF1A1P41-201ENST00000414667 207 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 RPL23AP6-201ENST00000446637 472 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 SCARNA18B-201ENST00000458806 135 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 FGF7P7-201ENST00000514120 227 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 RN7SKP132-201ENST00000516001 208 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 MIR5094-201ENST00000578766 85 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 AL513423.1-201ENST00000621695 132 ntBASIC3.43□□□□□ -1.86
COL9A1P20849 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL9A1P20849 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
COL9A1P20849 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.43□□□□□ -1.86
COL9A1P20849 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL9A1P20849 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL9A1P20849 AC104332.2-201ENST00000429959 156 ntBASIC3.42□□□□□ -1.86
COL9A1P20849 AC008885.1-201ENST00000514930 301 ntBASIC3.42□□□□□ -1.86
COL9A1P20849 CYP3A52P-201ENST00000563326 91 ntBASIC3.42□□□□□ -1.86
COL9A1P20849 AC133485.1-201ENST00000567176 124 ntBASIC3.42□□□□□ -1.86
COL9A1P20849 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL9A1P20849 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL9A1P20849 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
COL9A1P20849 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL9A1P20849 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL9A1P20849 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.41□□□□□ -1.86
COL9A1P20849 MIR526A1-201ENST00000384897 85 ntBASIC3.41□□□□□ -1.86
COL9A1P20849 RNA5SP39-201ENST00000411245 120 ntBASIC3.41□□□□□ -1.86
COL9A1P20849 AC105272.1-201ENST00000438604 198 ntBASIC3.41□□□□□ -1.86
COL9A1P20849 NDUFB9P3-201ENST00000521269 501 ntBASIC3.41□□□□□ -1.86
COL9A1P20849 AC026333.2-201ENST00000542164 106 ntBASIC3.41□□□□□ -1.86
COL9A1P20849 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL9A1P20849 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL9A1P20849 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL9A1P20849 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL9A1P20849 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
COL9A1P20849 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL9A1P20849 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL9A1P20849 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.4□□□□□ -1.87
COL9A1P20849 RPS29P31-201ENST00000446147 164 ntBASIC3.4□□□□□ -1.87
COL9A1P20849 RNU6-807P-201ENST00000516805 107 ntBASIC3.4□□□□□ -1.87
COL9A1P20849 SNORA74.3-201ENST00000517108 154 ntBASIC3.4□□□□□ -1.87
COL9A1P20849 MIR4796-201ENST00000580742 81 ntBASIC3.4□□□□□ -1.87
COL9A1P20849 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.4□□□□□ -1.87
COL9A1P20849 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.4□□□□□ -1.87
COL9A1P20849 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.87
COL9A1P20849 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL9A1P20849 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.39□□□□□ -1.87
COL9A1P20849 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL9A1P20849 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL9A1P20849 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL9A1P20849 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL9A1P20849 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL9A1P20849 RNU6-461P-201ENST00000364195 107 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 RNU6-283P-201ENST00000364788 107 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 RNY1P13-201ENST00000365030 105 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 MIR660-201ENST00000385235 97 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 AC022018.1-201ENST00000430685 241 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 RNU7-43P-201ENST00000516554 64 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 RNU6-1015P-201ENST00000517121 99 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 SNORD53-201ENST00000579969 78 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.39□□□□□ -1.87
COL9A1P20849 RNVU1-4-201ENST00000612985 164 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 239.9 ms