Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RNU6-295P-201ENST00000516901 104 ntBASIC1.77□□□□□ -2.13
FOXN3O00409 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
FOXN3O00409 U8.1-201ENST00000362843 134 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 RNU6-508P-201ENST00000363231 103 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 SNX2P2-201ENST00000424553 323 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 RNU5E-3P-201ENST00000515913 68 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 Y_RNA.686-201ENST00000516548 134 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 RNU6-1234P-201ENST00000516877 103 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 MIR3646-201ENST00000578301 84 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 MIR4662B-201ENST00000579498 81 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 AC097639.2-201ENST00000603159 172 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 AC011603.4-201ENST00000611325 277 ntBASIC1.76□□□□□ -2.13
FOXN3O00409 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
FOXN3O00409 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.76□□□□□ -2.13
FOXN3O00409 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXN3O00409 Y_RNA.218-201ENST00000364218 104 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 RNU6-597P-201ENST00000365620 102 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 RNU6-442P-201ENST00000383968 104 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 RNU6-1065P-201ENST00000384513 106 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 RNU6-997P-201ENST00000384725 107 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 MIR452-201ENST00000385020 85 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
FOXN3O00409 AL627390.1-201ENST00000396055 340 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 RNU1-98P-201ENST00000458992 160 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXN3O00409 RNU6-693P-201ENST00000516134 107 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 RNU6-917P-201ENST00000516294 104 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 AL365222.1-201ENST00000614661 98 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.75□□□□□ -2.13
FOXN3O00409 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
FOXN3O00409 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXN3O00409 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
FOXN3O00409 MIR302D-201ENST00000362275 68 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 Y_RNA.251-201ENST00000364551 99 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 RNA5SP363-201ENST00000365072 115 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 RNU6-81P-201ENST00000365608 104 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 Y_RNA.525-201ENST00000384570 113 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 RNU6-959P-201ENST00000384671 107 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 MIR526A1-201ENST00000384897 85 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 MIR548A2-201ENST00000384956 97 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 Y_RNA.584-201ENST00000391090 114 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 SNORA26-201ENST00000391286 122 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 SNORA26.9-201ENST00000391322 122 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 MIR548O-201ENST00000408583 114 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 SNORA18.4-201ENST00000516440 124 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 RNU7-25P-201ENST00000516544 62 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 AP001328.1-201ENST00000528550 176 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 AL160236.1-201ENST00000556317 195 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 MIR4255-201ENST00000579351 72 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 MIR4422-201ENST00000581938 83 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 AC015726.2-201ENST00000620112 122 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 MTND5P32-201ENST00000560711 1802 ntBASIC1.74□□□□□ -2.13
FOXN3O00409 AL442644.1-201ENST00000454390 3105 ntBASIC1.73□□□□□ -2.13
FOXN3O00409 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.73□□□□□ -2.13
FOXN3O00409 SNORD33-201ENST00000362761 85 ntBASIC1.73□□□□□ -2.13
FOXN3O00409 Y_RNA.261-201ENST00000364631 102 ntBASIC1.73□□□□□ -2.13
FOXN3O00409 RNU6-322P-201ENST00000516010 103 ntBASIC1.73□□□□□ -2.13
FOXN3O00409 RNU6-947P-201ENST00000516264 106 ntBASIC1.73□□□□□ -2.13
FOXN3O00409 RNU6-504P-201ENST00000516568 104 ntBASIC1.73□□□□□ -2.13
FOXN3O00409 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
FOXN3O00409 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
FOXN3O00409 SNORD113-1-201ENST00000365321 69 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 MIR518F-201ENST00000384973 87 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 AL451046.2-201ENST00000403074 277 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 SNRPGP14-201ENST00000435400 219 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 AC015922.2-201ENST00000435593 184 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 SNRPGP13-201ENST00000442212 177 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 RNA5SP458-201ENST00000516188 119 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 MIR502-201ENST00000606349 86 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 AC006441.5-201ENST00000612680 209 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 MIR376A2-201ENST00000636782 80 ntBASIC1.72□□□□□ -2.13
FOXN3O00409 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
FOXN3O00409 RNU6-235P-201ENST00000362644 107 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 Y_RNA.52-201ENST00000362760 96 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 RNU6-268P-201ENST00000364174 107 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 Y_RNA.291-201ENST00000364886 113 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 SNORD38C-201ENST00000384381 69 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 RNU6-1117P-201ENST00000384525 104 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 RNU1-78P-201ENST00000391248 165 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 MIR548I2-201ENST00000408348 149 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXN3O00409 AF228730.3-201ENST00000436691 102 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 AC027119.1-201ENST00000440877 241 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 SNORA18.7-201ENST00000516910 131 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 RNU2-60P-201ENST00000517290 128 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 AL161722.3-201ENST00000605789 2983 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.71□□□□□ -2.14
FOXN3O00409 RNU6-888P-201ENST00000363010 101 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 SNORA2.2-201ENST00000365473 135 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 RNU6-22P-201ENST00000384355 107 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 SNORA22C-201ENST00000384614 134 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 MIR136-201ENST00000385207 82 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 MIR653-201ENST00000385279 96 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 RNU6-1154P-201ENST00000391001 104 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 RNA5SP127-201ENST00000411051 133 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXN3O00409 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
FOXN3O00409 RNA5SP445-201ENST00000515889 115 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 324.4 ms