Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU7-80P-201ENST00000459562 61 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 RNU7-171P-201ENST00000459581 62 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 RNU6-267P-201ENST00000516714 103 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 SNORA18.7-201ENST00000516910 131 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 MIR4778-201ENST00000577635 80 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 U6.108-201ENST00000637764 58 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 SNORA1B-201ENST00000362535 133 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 SNORD14E-201ENST00000364009 85 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.437-201ENST00000384113 113 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 RNU6-409P-201ENST00000384114 104 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.454-201ENST00000384224 113 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 RNU6-443P-201ENST00000384780 107 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 MRPL35P3-201ENST00000421557 364 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 AC003685.2-201ENST00000422795 395 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 AL049830.1-201ENST00000468034 425 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 AP003484.1-201ENST00000530974 250 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 MIR4777-201ENST00000583710 86 ntBASIC2.84□□□□□ -1.95
CCDC39Q9UFE4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC39Q9UFE4 AC007336.1-201ENST00000576365 3828 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 SNORD115-13-201ENST00000363358 82 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 SNORD115-16-201ENST00000363887 82 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 RNU4-67P-201ENST00000364569 141 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 RNU6-219P-201ENST00000364728 107 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 RNU6-60P-201ENST00000364792 103 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 SNORD115-1-201ENST00000364961 82 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 MIR605-201ENST00000385078 83 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 MIR27B-201ENST00000385129 97 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 RNA5SP184-201ENST00000411071 108 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 RPS23P4-201ENST00000487908 423 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 RNU6-991P-201ENST00000516168 107 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 MIR4319-201ENST00000577285 85 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 AL513534.2-201ENST00000603836 250 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 AC095038.3-201ENST00000634439 195 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 MIR203B-201ENST00000636080 86 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 AC091304.10-201ENST00000641554 121 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 AL365361.1-201ENST00000566942 3481 ntBASIC2.83□□□□□ -1.96
CCDC39Q9UFE4 SNORD68-201ENST00000363214 84 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 RNA5SP456-201ENST00000364002 114 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 SNORD115-35-201ENST00000365122 82 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 MIR196B-201ENST00000384852 84 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 AL161788.1-201ENST00000441805 169 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 RNA5SP356-201ENST00000515972 94 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 AP002004.2-201ENST00000531656 154 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 MIR4762-201ENST00000585261 75 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 AC078899.2-201ENST00000595282 212 ntBASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
CCDC39Q9UFE4 AC062016.1-201ENST00000355719 319 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 RNU6-1084P-201ENST00000362498 107 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 SNORA18-201ENST00000384416 132 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 RNU6-24P-201ENST00000384440 107 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 MIR144-201ENST00000384886 86 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 RN7SKP200-201ENST00000410564 320 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 RNA5SP144-201ENST00000410846 116 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 AL512326.2-201ENST00000426359 151 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 AL353813.1-201ENST00000440700 253 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 RNU2-11P-201ENST00000459191 187 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 AC004812.1-201ENST00000540773 146 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 AC019288.1-201ENST00000557918 224 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 AL355297.2-201ENST00000604792 129 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 AC064859.1-201ENST00000624741 174 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 MIR338-201ENST00000636369 67 ntBASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC39Q9UFE4 snoU2-30.1-201ENST00000365012 70 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 RNU1-51P-201ENST00000365345 176 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 MIR23A-201ENST00000385245 73 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 SNX2P2-201ENST00000424553 323 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 AL513328.1-201ENST00000446460 224 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 AC087499.4-201ENST00000448505 178 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 RNU6-1041P-201ENST00000516254 102 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 RNU1-142P-201ENST00000516682 145 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 U4.3-201ENST00000621047 82 ntBASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC39Q9UFE4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 MIR342-201ENST00000362212 99 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 Y_RNA.96-201ENST00000363092 109 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 SNORA5B-201ENST00000363786 132 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 U8.5-201ENST00000364528 136 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 SNORD45B-201ENST00000364617 72 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 AL627390.1-201ENST00000396055 340 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 AC073261.1-201ENST00000429409 121 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 AC139453.2-201ENST00000487255 133 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 SNORD45.4-201ENST00000516629 73 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 RNA5SP82-201ENST00000516707 92 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 MIR4658-201ENST00000584344 65 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC39Q9UFE4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 207.8 ms