Protein–RNA interactions for Protein: Q9N2J8

HERV-H_2q24.1 provirus ancestral Env polyprotein, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q9N2J8 SNORD116-25-201ENST00000516517 92 ntBASIC1.5□□□□□ -2.17
Q9N2J8 RNU6-922P-201ENST00000516753 99 ntBASIC1.5□□□□□ -2.17
Q9N2J8 MIR378D2-201ENST00000580636 98 ntBASIC1.5□□□□□ -2.17
Q9N2J8 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
Q9N2J8 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
Q9N2J8 RNU6-548P-201ENST00000517083 115 ntBASIC1.49□□□□□ -2.17
Q9N2J8 RNU6-1270P-201ENST00000517128 108 ntBASIC1.49□□□□□ -2.17
Q9N2J8 AL357312.1-201ENST00000603879 298 ntBASIC1.49□□□□□ -2.17
Q9N2J8 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.48□□□□□ -2.17
Q9N2J8 SNORD115-28-201ENST00000363931 81 ntBASIC1.48□□□□□ -2.17
Q9N2J8 Y_RNA.555-201ENST00000384673 110 ntBASIC1.48□□□□□ -2.17
Q9N2J8 MIR548A2-201ENST00000384956 97 ntBASIC1.48□□□□□ -2.17
Q9N2J8 MIR518F-201ENST00000384973 87 ntBASIC1.48□□□□□ -2.17
Q9N2J8 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.48□□□□□ -2.17
Q9N2J8 RPL30P7-201ENST00000479312 323 ntBASIC1.48□□□□□ -2.17
Q9N2J8 SNORA18.7-201ENST00000516910 131 ntBASIC1.48□□□□□ -2.17
Q9N2J8 SNORA74.3-201ENST00000517108 154 ntBASIC1.48□□□□□ -2.17
Q9N2J8 BX248123.2-201ENST00000606318 124 ntBASIC1.48□□□□□ -2.17
Q9N2J8 GHRLOS.1-201ENST00000610995 70 ntBASIC1.48□□□□□ -2.17
Q9N2J8 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.48□□□□□ -2.17
Q9N2J8 Y_RNA.150-201ENST00000363562 102 ntBASIC1.47□□□□□ -2.17
Q9N2J8 RNA5SP190-201ENST00000365222 118 ntBASIC1.47□□□□□ -2.17
Q9N2J8 Y_RNA.337-201ENST00000365312 102 ntBASIC1.47□□□□□ -2.17
Q9N2J8 Y_RNA.521-201ENST00000384560 114 ntBASIC1.47□□□□□ -2.17
Q9N2J8 SNORD41-201ENST00000386967 70 ntBASIC1.47□□□□□ -2.17
Q9N2J8 CYCSP49-201ENST00000420810 319 ntBASIC1.47□□□□□ -2.17
Q9N2J8 AC087499.4-201ENST00000448505 178 ntBASIC1.47□□□□□ -2.17
Q9N2J8 SNORD123-201ENST00000459473 70 ntBASIC1.47□□□□□ -2.17
Q9N2J8 RNU4-57P-201ENST00000515980 135 ntBASIC1.47□□□□□ -2.17
Q9N2J8 RNU6-970P-201ENST00000516312 107 ntBASIC1.47□□□□□ -2.17
Q9N2J8 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.47□□□□□ -2.17
Q9N2J8 MIR4298-201ENST00000584380 73 ntBASIC1.47□□□□□ -2.17
Q9N2J8 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
Q9N2J8 AP000648.3-201ENST00000623539 4507 ntBASIC1.47□□□□□ -2.17
Q9N2J8 RNU4-84P-201ENST00000364200 139 ntBASIC1.46□□□□□ -2.18
Q9N2J8 RNU6-978P-201ENST00000364371 103 ntBASIC1.46□□□□□ -2.18
Q9N2J8 RNA5SP363-201ENST00000365072 115 ntBASIC1.46□□□□□ -2.18
Q9N2J8 SNORA1.2-201ENST00000365189 134 ntBASIC1.46□□□□□ -2.18
Q9N2J8 Y_RNA.441-201ENST00000384123 112 ntBASIC1.46□□□□□ -2.18
Q9N2J8 RNU6-886P-201ENST00000384319 105 ntBASIC1.46□□□□□ -2.18
Q9N2J8 Y_RNA.542-201ENST00000384641 111 ntBASIC1.46□□□□□ -2.18
Q9N2J8 RNU6-239P-201ENST00000390990 99 ntBASIC1.46□□□□□ -2.18
Q9N2J8 U8.17-201ENST00000391292 132 ntBASIC1.46□□□□□ -2.18
Q9N2J8 AC007751.1-201ENST00000529260 376 ntBASIC1.46□□□□□ -2.18
Q9N2J8 SNORD53B-201ENST00000577887 78 ntBASIC1.46□□□□□ -2.18
Q9N2J8 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.46□□□□□ -2.18
Q9N2J8 AC134878.1-201ENST00000619901 243 ntBASIC1.46□□□□□ -2.18
Q9N2J8 RNU6-1135P-201ENST00000411083 103 ntBASIC1.45□□□□□ -2.18
Q9N2J8 RNU5E-9P-201ENST00000411164 104 ntBASIC1.45□□□□□ -2.18
Q9N2J8 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.45□□□□□ -2.18
Q9N2J8 AC074198.2-201ENST00000508153 258 ntBASIC1.45□□□□□ -2.18
Q9N2J8 SNORD111.1-201ENST00000516421 86 ntBASIC1.45□□□□□ -2.18
Q9N2J8 RNU7-43P-201ENST00000516554 64 ntBASIC1.45□□□□□ -2.18
Q9N2J8 RNU6-902P-201ENST00000517212 91 ntBASIC1.45□□□□□ -2.18
Q9N2J8 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.45□□□□□ -2.18
Q9N2J8 AL365205.2-201ENST00000594586 68 ntBASIC1.45□□□□□ -2.18
Q9N2J8 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
Q9N2J8 AL121890.5-201ENST00000620848 304 ntBASIC1.45□□□□□ -2.18
Q9N2J8 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.45□□□□□ -2.18
Q9N2J8 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.45□□□□□ -2.18
Q9N2J8 Y_RNA.37-201ENST00000362606 108 ntBASIC1.44□□□□□ -2.18
Q9N2J8 SNORA25.7-201ENST00000364375 127 ntBASIC1.44□□□□□ -2.18
Q9N2J8 Y_RNA.410-201ENST00000383992 113 ntBASIC1.44□□□□□ -2.18
Q9N2J8 RNU6-1067P-201ENST00000384752 107 ntBASIC1.44□□□□□ -2.18
Q9N2J8 MIR517C-201ENST00000385103 95 ntBASIC1.44□□□□□ -2.18
Q9N2J8 RPS27P16-201ENST00000425758 201 ntBASIC1.44□□□□□ -2.18
Q9N2J8 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.44□□□□□ -2.18
Q9N2J8 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.44□□□□□ -2.18
Q9N2J8 AL512310.8-201ENST00000550183 120 ntBASIC1.44□□□□□ -2.18
Q9N2J8 RNU6-597P-201ENST00000365620 102 ntBASIC1.43□□□□□ -2.18
Q9N2J8 Y_RNA.393-201ENST00000383936 102 ntBASIC1.43□□□□□ -2.18
Q9N2J8 SNORA1-201ENST00000384107 130 ntBASIC1.43□□□□□ -2.18
Q9N2J8 RNU6-997P-201ENST00000384725 107 ntBASIC1.43□□□□□ -2.18
Q9N2J8 MIR520C-201ENST00000385005 87 ntBASIC1.43□□□□□ -2.18
Q9N2J8 PCNPP3-201ENST00000393579 471 ntBASIC1.43□□□□□ -2.18
Q9N2J8 AL591806.2-201ENST00000433122 173 ntBASIC1.43□□□□□ -2.18
Q9N2J8 AF228730.3-201ENST00000436691 102 ntBASIC1.43□□□□□ -2.18
Q9N2J8 RPL39P39-201ENST00000455840 151 ntBASIC1.43□□□□□ -2.18
Q9N2J8 SNORD13-201ENST00000459299 104 ntBASIC1.43□□□□□ -2.18
Q9N2J8 AC023790.1-201ENST00000482174 347 ntBASIC1.43□□□□□ -2.18
Q9N2J8 RNU7-181P-201ENST00000517234 74 ntBASIC1.43□□□□□ -2.18
Q9N2J8 MIR3664-201ENST00000579074 99 ntBASIC1.43□□□□□ -2.18
Q9N2J8 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
Q9N2J8 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
Q9N2J8 Y_RNA.180-201ENST00000363867 113 ntBASIC1.42□□□□□ -2.18
Q9N2J8 Y_RNA.272-201ENST00000364696 102 ntBASIC1.42□□□□□ -2.18
Q9N2J8 Y_RNA.370-201ENST00000365589 108 ntBASIC1.42□□□□□ -2.18
Q9N2J8 RNU6-1292P-201ENST00000383856 107 ntBASIC1.42□□□□□ -2.18
Q9N2J8 AC107297.1-201ENST00000459991 176 ntBASIC1.42□□□□□ -2.18
Q9N2J8 AP003484.1-201ENST00000530974 250 ntBASIC1.42□□□□□ -2.18
Q9N2J8 MIR4764-201ENST00000580680 88 ntBASIC1.42□□□□□ -2.18
Q9N2J8 MIR3129-201ENST00000581095 76 ntBASIC1.42□□□□□ -2.18
Q9N2J8 MIR548AR-201ENST00000582191 57 ntBASIC1.42□□□□□ -2.18
Q9N2J8 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.42□□□□□ -2.18
Q9N2J8 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.42□□□□□ -2.18
Q9N2J8 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
Q9N2J8 SNORD115-34-201ENST00000362441 82 ntBASIC1.41□□□□□ -2.18
Q9N2J8 SNORD115-12-201ENST00000362583 82 ntBASIC1.41□□□□□ -2.18
Q9N2J8 SNORD115-29-201ENST00000362834 82 ntBASIC1.41□□□□□ -2.18
Q9N2J8 SNORD115-9-201ENST00000362912 82 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 352.5 ms