Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 Y_RNA.229-201ENST00000364347 113 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 Y_RNA.292-201ENST00000364904 97 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 Y_RNA.336-201ENST00000365307 109 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 Y_RNA.466-201ENST00000384294 113 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 Y_RNA.539-201ENST00000384635 107 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 SNORD41-201ENST00000386967 70 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 Y_RNA.587-201ENST00000391210 103 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXC9P31274 AC245047.8-201ENST00000456455 284 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 RNU7-149P-201ENST00000516739 59 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 AL513534.2-201ENST00000603836 250 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 AL021707.8-201ENST00000609428 183 ntBASIC1.37□□□□□ -2.19
HOXC9P31274 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
HOXC9P31274 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXC9P31274 RNU4-38P-201ENST00000364472 129 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 SNORA20.1-201ENST00000364790 130 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 Y_RNA.304-201ENST00000365011 112 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 MIR626-201ENST00000385032 94 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 MIR136-201ENST00000385207 82 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 MIR653-201ENST00000385279 96 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 RN7SKP88-201ENST00000516847 250 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 AC004817.2-201ENST00000561794 651 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 CYP3A52P-201ENST00000563326 91 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 7SK.8-201ENST00000612110 250 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 7SK.11-201ENST00000615477 250 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 7SK.13-201ENST00000622040 250 ntBASIC1.36□□□□□ -2.19
HOXC9P31274 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
HOXC9P31274 Y_RNA.20-201ENST00000362479 113 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 Y_RNA.262-201ENST00000364641 102 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 SNORD38C-201ENST00000384381 69 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 MT-TT-201ENST00000387460 66 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
HOXC9P31274 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.35□□□□□ -2.19
HOXC9P31274 RPL30P7-201ENST00000479312 323 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 RNY3P16-201ENST00000516338 101 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 SNORA18.7-201ENST00000516910 131 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 MIR3664-201ENST00000579074 99 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 MIR3973-201ENST00000579824 107 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 GHRLOS.1-201ENST00000610995 70 ntBASIC1.35□□□□□ -2.19
HOXC9P31274 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.34□□□□□ -2.19
HOXC9P31274 RNU6-268P-201ENST00000364174 107 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 snoU2_19.4-201ENST00000364329 80 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 Y_RNA.478-201ENST00000384358 107 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 RNU6-1023P-201ENST00000516137 106 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 SNORD111.1-201ENST00000516421 86 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 RNU6-453P-201ENST00000516819 85 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 RNU6-111P-201ENST00000517179 105 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 Pinc.1-201ENST00000616452 154 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 AC015726.2-201ENST00000620112 122 ntBASIC1.34□□□□□ -2.19
HOXC9P31274 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
HOXC9P31274 Y_RNA.308-201ENST00000365043 101 ntBASIC1.33□□□□□ -2.2
HOXC9P31274 RNU4-17P-201ENST00000365598 141 ntBASIC1.33□□□□□ -2.2
HOXC9P31274 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.33□□□□□ -2.2
HOXC9P31274 MIR5688-201ENST00000580619 83 ntBASIC1.33□□□□□ -2.2
HOXC9P31274 AC011921.3-201ENST00000605540 361 ntBASIC1.33□□□□□ -2.2
HOXC9P31274 MIR6515-201ENST00000619843 57 ntBASIC1.33□□□□□ -2.2
HOXC9P31274 PVT1_3.1-201ENST00000620853 95 ntBASIC1.33□□□□□ -2.2
HOXC9P31274 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
HOXC9P31274 RNU6-653P-201ENST00000363074 106 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 MIR532-201ENST00000385025 91 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 RNU6-493P-201ENST00000391321 108 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 SNRPGP14-201ENST00000435400 219 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 SNORD77.4-201ENST00000516158 81 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 RNU6-165P-201ENST00000517170 99 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 AL357312.1-201ENST00000603879 298 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 AC211469.2-201ENST00000605461 205 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.32□□□□□ -2.2
HOXC9P31274 Y_RNA.242-201ENST00000364473 110 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 RNU6-923P-201ENST00000364753 107 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 MIR15B-201ENST00000385045 98 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 MIR1285-1-201ENST00000408593 84 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 Y_RNA.622-201ENST00000411091 108 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 RPL39P39-201ENST00000455840 151 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 SCARNA8-201ENST00000515924 131 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 RN7SKP164-201ENST00000516138 266 ntBASIC1.31□□□□□ -2.2
HOXC9P31274 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
HOXC9P31274 MIR26B-201ENST00000362251 77 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 Y_RNA.188-201ENST00000363952 111 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 Y_RNA.199-201ENST00000364014 102 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 RNY4P28-201ENST00000365281 93 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 Y_RNA.401-201ENST00000383965 117 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 SNORD26-201ENST00000384147 75 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 RNU6-381P-201ENST00000391259 108 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 AL606845.1-201ENST00000404881 255 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 RNU6-955P-201ENST00000410497 104 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 Y_RNA.626-201ENST00000411288 95 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 SNORD123-201ENST00000459473 70 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 Y_RNA.666-201ENST00000516187 112 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 RNU6-1271P-201ENST00000517049 105 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 SNORA74.3-201ENST00000517108 154 ntBASIC1.3□□□□□ -2.2
HOXC9P31274 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.3□□□□□ -2.2
HOXC9P31274 RNU6-1138P-201ENST00000365359 106 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 Y_RNA.486-201ENST00000384398 107 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 Y_RNA.489-201ENST00000384410 101 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 MIR520C-201ENST00000385005 87 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 MIR616-201ENST00000385293 97 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 MIR548O-201ENST00000408583 114 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 Y_RNA.618-201ENST00000410949 107 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXC9P31274 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 216.3 ms