Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AP001362.1-201ENST00000625165 124 ntBASIC3.54□□□□□ -1.84
COL9A1P20849 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL9A1P20849 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL9A1P20849 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL9A1P20849 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
COL9A1P20849 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL9A1P20849 RNA5SP99-201ENST00000364020 114 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 Y_RNA.355-201ENST00000365462 98 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 SNORA2B-201ENST00000384583 137 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 MIR764-201ENST00000390811 85 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 AC087499.7-201ENST00000441958 109 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 VWA8P1-201ENST00000510889 176 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 RNA5SP458-201ENST00000516188 119 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 SNORA70.14-201ENST00000516205 110 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 AC020891.4-201ENST00000605745 93 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 XIST_intron.1-201ENST00000619444 68 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 AP003355.3-201ENST00000623465 114 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 AC022513.1-201ENST00000624512 117 ntBASIC3.53□□□□□ -1.84
COL9A1P20849 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL9A1P20849 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL9A1P20849 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL9A1P20849 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL9A1P20849 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.53□□□□□ -1.84
COL9A1P20849 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL9A1P20849 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL9A1P20849 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.85
COL9A1P20849 AP006437.1-201ENST00000641440 3685 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
COL9A1P20849 MAPK10-253ENST00000641010 4072 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 RNU4-32P-201ENST00000363404 141 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 SNORD74.4-201ENST00000364129 80 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 Y_RNA.338-201ENST00000365320 114 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 RNU6-411P-201ENST00000384451 107 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 MIR7-2-201ENST00000384970 110 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 SNORD28B-201ENST00000390993 75 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 HMGN1P33-201ENST00000432945 451 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 AL591806.2-201ENST00000433122 173 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 HSPE1P9-201ENST00000440046 311 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 AL450471.1-201ENST00000447509 127 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 snoU13.11-201ENST00000459219 104 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 MIR8065-201ENST00000620577 100 ntBASIC3.52□□□□□ -1.85
COL9A1P20849 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL9A1P20849 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
COL9A1P20849 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.52□□□□□ -1.85
COL9A1P20849 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL9A1P20849 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL9A1P20849 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
COL9A1P20849 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL9A1P20849 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.51□□□□□ -1.85
COL9A1P20849 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.51□□□□□ -1.85
COL9A1P20849 AP000648.3-201ENST00000623539 4507 ntBASIC3.51□□□□□ -1.85
COL9A1P20849 U8.2-201ENST00000363156 134 ntBASIC3.51□□□□□ -1.85
COL9A1P20849 RNA5SP133-201ENST00000363368 119 ntBASIC3.51□□□□□ -1.85
COL9A1P20849 MIR93-201ENST00000385024 80 ntBASIC3.51□□□□□ -1.85
COL9A1P20849 RNU1-101P-201ENST00000391171 127 ntBASIC3.51□□□□□ -1.85
COL9A1P20849 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL9A1P20849 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
COL9A1P20849 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL9A1P20849 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL9A1P20849 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL9A1P20849 RNU6-686P-201ENST00000364839 107 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 AC108938.1-201ENST00000451204 136 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 SNORD4B-201ENST00000459083 72 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 RNU6-579P-201ENST00000516879 102 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 MIR2682-201ENST00000580305 110 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 AL449363.1-201ENST00000617815 186 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 Z97988.1-201ENST00000637697 135 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL9A1P20849 MAPK10-362ENST00000641864 4484 ntBASIC3.5□□□□□ -1.85
COL9A1P20849 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL9A1P20849 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.49□□□□□ -1.85
COL9A1P20849 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.49□□□□□ -1.85
COL9A1P20849 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL9A1P20849 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL9A1P20849 HSBP1P2-201ENST00000299671 229 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 MIRLET7A1-201ENST00000362295 80 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 AC004552.1-201ENST00000419089 348 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 AC093850.1-201ENST00000454121 251 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.49□□□□□ -1.85
COL9A1P20849 RPS26P3-201ENST00000470205 348 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 RN7SL594P-201ENST00000470590 287 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 AC090543.2-201ENST00000483963 348 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 AC004057.1-201ENST00000485827 348 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 Y_RNA.660-201ENST00000516002 120 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.49□□□□□ -1.85
COL9A1P20849 AC026271.5-201ENST00000577873 130 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 AC105081.1-201ENST00000617727 106 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 Y_RNA.788-201ENST00000622394 112 ntBASIC3.49□□□□□ -1.85
COL9A1P20849 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
COL9A1P20849 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL9A1P20849 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL9A1P20849 RNU6-1031P-201ENST00000384773 107 ntBASIC3.48□□□□□ -1.85
COL9A1P20849 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.48□□□□□ -1.85
COL9A1P20849 SNORD14A-201ENST00000606526 91 ntBASIC3.48□□□□□ -1.85
COL9A1P20849 AL512598.1-201ENST00000610158 273 ntBASIC3.48□□□□□ -1.85
COL9A1P20849 MIR8066-201ENST00000617280 78 ntBASIC3.48□□□□□ -1.85
COL9A1P20849 AL356274.2-201ENST00000624379 3752 ntBASIC3.48□□□□□ -1.85
COL9A1P20849 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL9A1P20849 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.47□□□□□ -1.85
COL9A1P20849 AC062016.1-201ENST00000355719 319 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 209.3 ms