Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-902P-201ENST00000517212 91 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 MIR3668-201ENST00000582138 75 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-888P-201ENST00000363010 101 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-643P-201ENST00000384018 107 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 SNORD61-201ENST00000384252 73 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.547-201ENST00000384654 119 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 RPS27P16-201ENST00000425758 201 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 SNORA18.7-201ENST00000516910 131 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 SNORA74.3-201ENST00000517108 154 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 AL121890.5-201ENST00000620848 304 ntBASIC1.59□□□□□ -2.15
CCDC28AQ8IWP9 AL356320.1-201ENST00000429616 163 ntBASIC1.58□□□□□ -2.16
CCDC28AQ8IWP9 SNORD123-201ENST00000459473 70 ntBASIC1.58□□□□□ -2.16
CCDC28AQ8IWP9 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC28AQ8IWP9 RNU6-1270P-201ENST00000517128 108 ntBASIC1.58□□□□□ -2.16
CCDC28AQ8IWP9 MIR4431-201ENST00000579990 94 ntBASIC1.58□□□□□ -2.16
CCDC28AQ8IWP9 SNORD115-28-201ENST00000363931 81 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 Y_RNA.240-201ENST00000364469 95 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 MIR518F-201ENST00000384973 87 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 U8.17-201ENST00000391292 132 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 RNU4-57P-201ENST00000515980 135 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 RNU6-970P-201ENST00000516312 107 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 RNU7-43P-201ENST00000516554 64 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 AL512310.8-201ENST00000550183 120 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 MIR3664-201ENST00000579074 99 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 MIR378D2-201ENST00000580636 98 ntBASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
CCDC28AQ8IWP9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 RNA5SP289-201ENST00000362332 137 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 RNU6-682P-201ENST00000363843 106 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 SNORA1.2-201ENST00000365189 134 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 MIR548A2-201ENST00000384956 97 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 RNU2-64P-201ENST00000411315 191 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 AL445646.1-201ENST00000431784 216 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 AC005840.1-201ENST00000498412 377 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 Y_RNA.662-201ENST00000516028 97 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 SNORD111.1-201ENST00000516421 86 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 SNORD116-25-201ENST00000516517 92 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 RNU6-861P-201ENST00000516745 106 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 AC007751.1-201ENST00000529260 376 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.56□□□□□ -2.16
CCDC28AQ8IWP9 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 RNA5SP425-201ENST00000410336 112 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 AC006461.1-201ENST00000412637 326 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 AC087499.4-201ENST00000448505 178 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 RNU1-98P-201ENST00000458992 160 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 AC107027.2-201ENST00000512197 115 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 SNRPGP19-201ENST00000603826 189 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 AC134878.1-201ENST00000619901 243 ntBASIC1.55□□□□□ -2.16
CCDC28AQ8IWP9 RNU4-82P-201ENST00000362443 140 ntBASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 SNORD48-201ENST00000364953 64 ntBASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 Y_RNA.357-201ENST00000365487 109 ntBASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 MIR520C-201ENST00000385005 87 ntBASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 SEPT7P4-201ENST00000437076 306 ntBASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 RPL39P39-201ENST00000455840 151 ntBASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 AC098479.1-201ENST00000609225 154 ntBASIC1.54□□□□□ -2.16
CCDC28AQ8IWP9 Y_RNA.542-201ENST00000384641 111 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 AC019129.1-201ENST00000403786 261 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 AL023284.1-201ENST00000403956 276 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 RNU7-181P-201ENST00000517234 74 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 MIR5089-201ENST00000580047 84 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 MIR3618-201ENST00000580330 88 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 MIR4764-201ENST00000580680 88 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 FTX_2.1-201ENST00000618816 94 ntBASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.53□□□□□ -2.16
CCDC28AQ8IWP9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.37-201ENST00000362606 108 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-978P-201ENST00000364371 103 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 SNORA16.1-201ENST00000364597 132 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.270-201ENST00000364693 104 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.410-201ENST00000383992 113 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.500-201ENST00000384466 111 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-1067P-201ENST00000384752 107 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 MIR23A-201ENST00000385245 73 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 RN7SKP88-201ENST00000516847 250 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 IGKV3-31-201ENST00000523109 329 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 MIR1273D-201ENST00000577266 86 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 MIR548AR-201ENST00000582191 57 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 7SK.8-201ENST00000612110 250 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 7SK.11-201ENST00000615477 250 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 MIR6852-201ENST00000621699 66 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 7SK.13-201ENST00000622040 250 ntBASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC28AQ8IWP9 MIR449A-201ENST00000362113 91 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.370-201ENST00000365589 108 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 Y_RNA.521-201ENST00000384560 114 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 AC107297.1-201ENST00000459991 176 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 RNU6-947P-201ENST00000516264 106 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 AP003484.1-201ENST00000530974 250 ntBASIC1.51□□□□□ -2.17
CCDC28AQ8IWP9 AL365205.2-201ENST00000594586 68 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 152.5 ms