Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 UBE2DNL-203ENST00000474922 222 ntBASIC3.17□□□□□ -1.9
PCDHB11Q9Y5F2 AP003327.1-201ENST00000529684 127 ntBASIC3.17□□□□□ -1.9
PCDHB11Q9Y5F2 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 RNU1-70P-201ENST00000362618 164 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 RNA5SP173-201ENST00000364857 136 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 RNU6-820P-201ENST00000384273 107 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 Y_RNA.601-201ENST00000410500 113 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 RNA5SP293-201ENST00000410527 113 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 HSPE1P9-201ENST00000440046 311 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 AC069257.2-201ENST00000441819 155 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 EIF4BP1-201ENST00000554881 351 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 ZNF861P-201ENST00000588126 639 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 FAM71BP1-201ENST00000604431 523 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 AC095038.3-201ENST00000634439 195 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 AC007336.1-201ENST00000576365 3828 ntBASIC3.16□□□□□ -1.9
PCDHB11Q9Y5F2 AC092881.1-201ENST00000638218 2733 ntBASIC3.15□□□□□ -1.9
PCDHB11Q9Y5F2 Y_RNA.10-201ENST00000362371 110 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-833P-201ENST00000363486 107 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 SNORD56.3-201ENST00000363507 71 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 AL034345.1-201ENST00000407768 123 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 MIR1267-201ENST00000408723 78 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 POLR2J4-204ENST00000418424 324 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 RNU2-11P-201ENST00000459191 187 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 RNU7-181P-201ENST00000517234 74 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 AC026421.1-201ENST00000519101 163 ntBASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
PCDHB11Q9Y5F2 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-363P-201ENST00000362895 105 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 Y_RNA.299-201ENST00000364973 94 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 Y_RNA.510-201ENST00000384511 114 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-950P-201ENST00000384651 107 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 U8.16-201ENST00000391279 133 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 AC104389.3-201ENST00000445629 235 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 PGBD4P5-201ENST00000445958 426 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 RNA5SP57-201ENST00000459463 123 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 AC006483.1-201ENST00000487308 313 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 RPL23AP94-201ENST00000512518 302 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 MIR4694-201ENST00000578534 80 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 Y_RNA.773-201ENST00000607168 90 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 MIR7106-201ENST00000612419 65 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 AC022202.1-201ENST00000613515 211 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 MIR203B-201ENST00000636080 86 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 MIR1255B1-201ENST00000636325 63 ntBASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHB11Q9Y5F2 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 SNORA4.2-201ENST00000365313 147 ntBASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 RNA5SP229-201ENST00000410809 99 ntBASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-893P-201ENST00000458841 100 ntBASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 snoMBII-202.2-201ENST00000517263 86 ntBASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 MIR5094-201ENST00000578766 85 ntBASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHB11Q9Y5F2 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 Y_RNA.155-201ENST00000363632 101 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-733P-201ENST00000410759 104 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 BX510359.4-201ENST00000423750 193 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 AC092427.1-202ENST00000430569 476 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 AL135938.1-201ENST00000443141 297 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 RPS27P29-201ENST00000463110 252 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 RNU1-143P-201ENST00000516296 146 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 RNA5SP168-201ENST00000516642 112 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 SCARNA20.6-201ENST00000517251 106 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 AL513534.2-201ENST00000603836 250 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 U1.23-201ENST00000610293 146 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 RNU1-68P-201ENST00000615382 146 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 U1.39-201ENST00000621562 146 ntBASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHB11Q9Y5F2 SNORA5B-201ENST00000363786 132 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RNU4-67P-201ENST00000364569 141 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-1134P-201ENST00000365156 101 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 SNORA1.2-201ENST00000365189 134 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 Y_RNA.360-201ENST00000365512 102 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-409P-201ENST00000384114 104 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 MIR577-201ENST00000385196 96 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RNU6-1275P-201ENST00000391087 107 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RNU4-69P-201ENST00000410677 143 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RN7SL863P-201ENST00000462370 296 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 UBL5P3-201ENST00000475112 231 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RNA5SP217-201ENST00000515959 91 ntBASIC3.11□□□□□ -1.91
PCDHB11Q9Y5F2 RPPH1-2P-201ENST00000516688 293 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 269.9 ms