Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC016907.1-201ENST00000419483 435 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-268P-201ENST00000364174 107 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-913P-201ENST00000390913 95 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNA5SP237-201ENST00000410414 113 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 USMG5P1-201ENST00000425964 177 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-1198P-201ENST00000516904 67 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-88P-201ENST00000606801 100 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-792P-201ENST00000363490 107 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.180-201ENST00000363867 113 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.311-201ENST00000365068 96 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 RNU5E-9P-201ENST00000411164 104 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 AC137499.1-201ENST00000427602 88 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 SNORD18.2-201ENST00000459604 70 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 AC091179.3-201ENST00000474761 144 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 AC002044.1-201ENST00000606707 158 ntBASIC-2.08□□□□□ -2.74
CCDC88BA6NC98 RNU6-179P-201ENST00000363350 107 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.179-201ENST00000363844 90 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.263-201ENST00000364659 114 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 MTCO2P3-201ENST00000442543 421 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 SNORA25.17-201ENST00000517184 124 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 MIR3684-201ENST00000579779 74 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 ZNF92P2-201ENST00000600543 1059 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 AC072046.2-201ENST00000618366 268 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 AC022418.1-201ENST00000624118 445 ntBASIC-2.09□□□□□ -2.74
CCDC88BA6NC98 RNY4P7-201ENST00000364600 96 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 AC022028.1-201ENST00000412054 408 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 RPL30P16-201ENST00000419341 429 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 RNU7-55P-201ENST00000459426 62 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 MIR5704-201ENST00000584029 77 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 AC245297.2-201ENST00000610119 565 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 AP001282.2-201ENST00000616149 309 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 AC097460.3-201ENST00000623099 442 ntBASIC-2.1□□□□□ -2.75
CCDC88BA6NC98 MIR527-201ENST00000385244 85 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 MTND1P11-201ENST00000456661 876 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 RNU6-437P-201ENST00000459408 95 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 SERF1AP1-201ENST00000514575 187 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 RNU6-201P-201ENST00000517100 61 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 YWHAEP2-201ENST00000580066 112 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 MIR4520-1-201ENST00000582609 70 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 AC245014.2-201ENST00000603689 287 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 MIR6854-201ENST00000614935 69 ntBASIC-2.11□□□□□ -2.75
CCDC88BA6NC98 RNU6-1287P-201ENST00000362914 107 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 SNORD115-7-201ENST00000365306 82 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 RNU6-1060P-201ENST00000384664 107 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 MIR558-201ENST00000384920 94 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 MTCYBP36-201ENST00000404146 440 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 SNRPGP14-201ENST00000435400 219 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 AL353803.5-201ENST00000599815 141 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 AC005972.2-201ENST00000604690 348 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 RNU6-85P-201ENST00000605989 107 ntBASIC-2.12□□□□□ -2.75
CCDC88BA6NC98 RNA5SP403-201ENST00000363598 108 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 Y_RNA.377-201ENST00000365644 108 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 RNU6-354P-201ENST00000383862 107 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 RNU6-610P-201ENST00000384264 107 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 Y_RNA.517-201ENST00000384551 106 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 RNU6-1001P-201ENST00000411265 100 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 MTND1P12-201ENST00000455231 147 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 AC091931.1-201ENST00000623488 728 ntBASIC-2.13□□□□□ -2.75
CCDC88BA6NC98 Y_RNA.221-201ENST00000364248 96 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 RNU1-141P-201ENST00000364623 158 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 RNU6-723P-201ENST00000383973 107 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 RNU6-154P-201ENST00000384306 106 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 RNU2-29P-201ENST00000410423 189 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 Y_RNA.715-201ENST00000517082 110 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 SNORD24-201ENST00000383884 75 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 RNU6-393P-201ENST00000384475 107 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 RNU6-541P-201ENST00000384709 110 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 MIR626-201ENST00000385032 94 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 MIR548K-201ENST00000408406 116 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 RNU6-370P-201ENST00000411008 104 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 AC079140.5-201ENST00000507882 310 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 AP003733.2-201ENST00000529409 171 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 AC008507.2-201ENST00000588402 1176 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 MIR8068-201ENST00000618032 68 ntBASIC-2.14□□□□□ -2.75
CCDC88BA6NC98 Y_RNA.151-201ENST00000363566 112 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 RNU6-576P-201ENST00000390854 102 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 RNU6-325P-201ENST00000411132 105 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 MTND3P8-201ENST00000412909 339 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 UBE2D3P4-201ENST00000441973 436 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 AC109347.2-201ENST00000610220 349 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 U6.115-201ENST00000636045 103 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 U6.114-201ENST00000636407 96 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 AC099654.12-201ENST00000639868 649 ntBASIC-2.15□□□□□ -2.75
CCDC88BA6NC98 MIR20A-201ENST00000362279 71 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 Y_RNA.110-201ENST00000363220 99 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 SNORD115-8-201ENST00000363856 82 ntBASIC-2.16□□□□□ -2.76
Retrieved 100 of 98,524 protein–RNA pairs in 179 ms