Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORA9-201ENST00000384215 133 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 RNU6-1274P-201ENST00000384557 107 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 RNU6-1104P-201ENST00000384723 104 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 MIR520G-201ENST00000385064 90 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 RNA5SP210-201ENST00000391034 120 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 MICF-203ENST00000432679 129 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 RPL39P25-201ENST00000449384 154 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 SCARNA23-201ENST00000516060 130 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 MIR3199-1-201ENST00000582434 88 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 AC021443.1-201ENST00000604478 211 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 RNY3P2-201ENST00000362918 102 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 Y_RNA.290-201ENST00000364879 114 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 MIR218-1-201ENST00000384999 110 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 RPS12P2-201ENST00000439728 269 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 RNA5SP57-201ENST00000459463 123 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 RNU2-34P-201ENST00000516534 121 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 DEFB131E-201ENST00000532329 154 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 MIR4635-201ENST00000583759 79 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 AL356280.1-201ENST00000603614 379 ntBASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC39Q9UFE4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
CCDC39Q9UFE4 RNU4-36P-201ENST00000364294 144 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 RNU6-438P-201ENST00000365561 103 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 MIR9-1-201ENST00000385198 89 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3□□□□□ -1.93
CCDC39Q9UFE4 RNU7-164P-201ENST00000459221 62 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 AC023141.11-201ENST00000508864 202 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 RNU7-123P-201ENST00000515911 60 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 AC022523.2-201ENST00000561045 150 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 RPL12P50-201ENST00000603116 116 ntBASIC3□□□□□ -1.93
CCDC39Q9UFE4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3□□□□□ -1.93
CCDC39Q9UFE4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC39Q9UFE4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 RNY1P1-201ENST00000364372 112 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 Y_RNA.244-201ENST00000364484 109 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 SNORA2.2-201ENST00000365473 135 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 U8.17-201ENST00000391292 132 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 AC025750.2-201ENST00000442609 450 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 RPL39P39-201ENST00000455840 151 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 SNORA31.11-201ENST00000516528 139 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 AC079600.2-201ENST00000550076 130 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 MIR3163-201ENST00000581592 73 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 ELOCP29-201ENST00000588193 334 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 AC007229.1-201ENST00000590455 412 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 AC073413.2-201ENST00000604332 360 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 AL049779.4-201ENST00000604500 156 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 ZNF720P1-201ENST00000562403 1939 ntBASIC2.99□□□□□ -1.93
CCDC39Q9UFE4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 RNU6-816P-201ENST00000390914 107 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 RNU6-1268P-201ENST00000391214 107 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 RNU6-1239P-201ENST00000391310 107 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AC105272.1-201ENST00000438604 198 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AC107083.1-201ENST00000439643 279 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AC009238.1-201ENST00000442165 424 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AC009237.6-201ENST00000446969 424 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AC233266.1-201ENST00000454518 96 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 RNU2-13P-201ENST00000515909 113 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 RNU6-521P-201ENST00000516663 105 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 MIR3200-201ENST00000580767 85 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AC242852.1-201ENST00000612151 96 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 IGLL4P-201ENST00000614590 133 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AL449363.1-201ENST00000617815 186 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 AC244015.1-201ENST00000622301 99 ntBASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
CCDC39Q9UFE4 Y_RNA.73-201ENST00000362910 113 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 Y_RNA.242-201ENST00000364473 110 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 RNU6-497P-201ENST00000365316 104 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 RNU6-1276P-201ENST00000365372 104 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 Y_RNA.410-201ENST00000383992 113 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 SNORA11.1-201ENST00000408133 129 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 MIR1912-201ENST00000410389 80 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 AC022254.1-201ENST00000567857 235 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 MIR5092-201ENST00000583139 88 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 AC022217.4-201ENST00000604389 163 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 AC005000.2-201ENST00000605468 310 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 FO624990.1-201ENST00000636373 85 ntBASIC2.97□□□□□ -1.93
CCDC39Q9UFE4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RNA5SP393-201ENST00000363423 117 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RNU6-1099P-201ENST00000363533 107 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms