Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU6-341P-201ENST00000516973 96 ntBASIC1.2□□□□□ -2.22
PTPN4P29074 AL512310.8-201ENST00000550183 120 ntBASIC1.2□□□□□ -2.22
PTPN4P29074 CYP3A52P-201ENST00000563326 91 ntBASIC1.2□□□□□ -2.22
PTPN4P29074 AC006380.1-201ENST00000603598 186 ntBASIC1.2□□□□□ -2.22
PTPN4P29074 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.2□□□□□ -2.22
PTPN4P29074 Y_RNA.796-201ENST00000364268 102 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 Y_RNA.799-201ENST00000364992 102 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 SNORD42.2-201ENST00000365570 69 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 Y_RNA.431-201ENST00000384086 102 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 Y_RNA.446-201ENST00000384178 104 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 RNU6-505P-201ENST00000384427 107 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 RNU5A-5P-201ENST00000411054 116 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 STAG3L5P-204ENST00000443759 179 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 Y_RNA.639-201ENST00000458981 102 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 RNU6-1170P-201ENST00000515974 106 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 SNORA70.12-201ENST00000516084 153 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 RNU6-155P-201ENST00000516347 100 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 RNU6-63P-201ENST00000516690 95 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 RN7SKP88-201ENST00000516847 250 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 MIR4423-201ENST00000580922 80 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 MIR4452-201ENST00000583004 71 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 AL365434.2-201ENST00000607979 234 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 AC006157.1-201ENST00000611750 366 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 AL021879.1-201ENST00000611756 288 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 7SK.8-201ENST00000612110 250 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 7SK.11-201ENST00000615477 250 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 AC007485.1-201ENST00000616755 206 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 MIR7111-201ENST00000619751 72 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 7SK.13-201ENST00000622040 250 ntBASIC1.19□□□□□ -2.22
PTPN4P29074 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
PTPN4P29074 MIR369-201ENST00000362155 70 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 SNORA1B-201ENST00000362535 133 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 Y_RNA.122-201ENST00000363331 96 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 Y_RNA.267-201ENST00000364679 109 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 SNORA70.7-201ENST00000384159 133 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 Y_RNA.458-201ENST00000384240 102 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 Y_RNA.570-201ENST00000384750 101 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 RPS29P28-201ENST00000446439 141 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 HSPE1P13-201ENST00000451143 297 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.18□□□□□ -2.22
PTPN4P29074 RNU6-1337P-201ENST00000516525 95 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 RNU6-1291P-201ENST00000516591 104 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 RNU2-56P-201ENST00000516826 190 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 AL358944.1-201ENST00000528537 144 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 AP002004.2-201ENST00000531656 154 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 RPS29P30-201ENST00000600975 111 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 AL513534.2-201ENST00000603836 250 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 AC022441.3-201ENST00000605737 136 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 SNORD3E-202ENST00000627253 216 ntBASIC1.18□□□□□ -2.22
PTPN4P29074 Y_RNA.118-201ENST00000363300 101 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 RNU6-136P-201ENST00000384663 107 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 MIR520G-201ENST00000385064 90 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 MIR660-201ENST00000385235 97 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
PTPN4P29074 RNA5SP482-201ENST00000391269 118 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 RNU2-61P-201ENST00000411069 191 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 MTND1P14-201ENST00000427400 950 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 RNU6-475P-201ENST00000516073 104 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 RNU6-436P-201ENST00000516171 114 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 RNU6-1096P-201ENST00000517089 102 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 RN7SKP295-201ENST00000517264 153 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
PTPN4P29074 MIR3664-201ENST00000579074 99 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 AC136443.5-201ENST00000603741 370 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 AL121655.1-201ENST00000605811 308 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 Y_RNA.772-201ENST00000606692 102 ntBASIC1.17□□□□□ -2.22
PTPN4P29074 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
PTPN4P29074 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
PTPN4P29074 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.16□□□□□ -2.22
PTPN4P29074 Y_RNA.265-201ENST00000364677 108 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 RNU6-1175P-201ENST00000365200 107 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 RNA5SP511-201ENST00000410487 115 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 MCFD2P1-201ENST00000417812 300 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 AL591704.2-201ENST00000421658 181 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 MTND4P19-201ENST00000446659 478 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 OR9P1P-201ENST00000496431 281 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 AC093852.1-201ENST00000503587 266 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 RNU6-322P-201ENST00000516010 103 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 SUMO2P16-201ENST00000519475 264 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 AC090971.5-201ENST00000621102 293 ntBASIC1.16□□□□□ -2.22
PTPN4P29074 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 Y_RNA.31-201ENST00000362574 102 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 Y_RNA.61-201ENST00000362835 102 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 RNU6-324P-201ENST00000363957 106 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 RNU4-76P-201ENST00000364509 141 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 Y_RNA.462-201ENST00000384268 102 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 SNORD116-13-201ENST00000384408 92 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 Y_RNA.526-201ENST00000384572 110 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 RNU6-308P-201ENST00000390957 107 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 MIR1302-11-201ENST00000408051 138 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 MIR1302-9-201ENST00000408365 138 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 MIR1302-10-201ENST00000408734 138 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 AL354751.2-201ENST00000415471 210 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 AL162725.1-201ENST00000435405 301 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 RPEP5-201ENST00000441137 268 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 COX6CP14-201ENST00000469580 174 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 MIR1302-2-201ENST00000607096 138 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 AL160413.1-201ENST00000622780 310 ntBASIC1.15□□□□□ -2.23
PTPN4P29074 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 223.5 ms