Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNORA71B-202ENST00000439232 272 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 SCARNA11.3-201ENST00000517276 130 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 AC024995.1-201ENST00000523014 93 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 YPEL5P3-201ENST00000547227 352 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.03□□□□□ -1.76
COL9A1P20849 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.03□□□□□ -1.76
COL9A1P20849 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL9A1P20849 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL9A1P20849 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
COL9A1P20849 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.77
COL9A1P20849 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
COL9A1P20849 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.02□□□□□ -1.77
COL9A1P20849 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL9A1P20849 RNU1-15P-201ENST00000353977 144 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 RNA5SP295-201ENST00000362655 121 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 RNA5SP399-201ENST00000364003 117 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL9A1P20849 MIR708-201ENST00000390708 88 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 MIR887-201ENST00000401258 79 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 MICF-203ENST00000432679 129 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 RNU7-113P-201ENST00000459273 62 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 RNU6-991P-201ENST00000516168 107 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 RNA5SP309-201ENST00000516670 106 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 MIR432-201ENST00000606207 94 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 LINC00901.1-201ENST00000617252 152 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 CTSLP2-204ENST00000629029 392 ntBASIC4.02□□□□□ -1.77
COL9A1P20849 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.02□□□□□ -1.77
COL9A1P20849 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.02□□□□□ -1.77
COL9A1P20849 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL9A1P20849 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
COL9A1P20849 RNU6-633P-201ENST00000362612 103 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 RNU6-1313P-201ENST00000362622 102 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 SNORD115-2-201ENST00000362842 82 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 RNA5SP51-201ENST00000364750 119 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 SNORD115-20-201ENST00000365099 82 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 RNA5SP482-201ENST00000391269 118 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.01□□□□□ -1.77
COL9A1P20849 SCARNA17.1-201ENST00000516211 143 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 RNU6-1041P-201ENST00000516254 102 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 SCARNA17.2-201ENST00000516334 143 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 AC244505.7-201ENST00000599675 272 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 SCARNA17.4-201ENST00000614296 143 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 MIR5739-201ENST00000619803 80 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 AL512310.12-203ENST00000640543 90 ntBASIC4.01□□□□□ -1.77
COL9A1P20849 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL9A1P20849 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.01□□□□□ -1.77
COL9A1P20849 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4□□□□□ -1.77
COL9A1P20849 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4□□□□□ -1.77
COL9A1P20849 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL9A1P20849 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL9A1P20849 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
COL9A1P20849 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL9A1P20849 RNA5SP374-201ENST00000362939 125 ntBASIC4□□□□□ -1.77
COL9A1P20849 SNORA1.1-201ENST00000364671 133 ntBASIC4□□□□□ -1.77
COL9A1P20849 Y_RNA.316-201ENST00000365118 111 ntBASIC4□□□□□ -1.77
COL9A1P20849 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC4□□□□□ -1.77
COL9A1P20849 AL031183.1-201ENST00000457667 207 ntBASIC4□□□□□ -1.77
COL9A1P20849 AC100770.1-201ENST00000532310 322 ntBASIC4□□□□□ -1.77
COL9A1P20849 ZNF861P-201ENST00000588126 639 ntBASIC4□□□□□ -1.77
COL9A1P20849 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC4□□□□□ -1.77
COL9A1P20849 MIR7157-201ENST00000635801 60 ntBASIC4□□□□□ -1.77
COL9A1P20849 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4□□□□□ -1.77
COL9A1P20849 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL9A1P20849 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL9A1P20849 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL9A1P20849 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
COL9A1P20849 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL9A1P20849 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.99□□□□□ -1.77
COL9A1P20849 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL9A1P20849 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL9A1P20849 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.99□□□□□ -1.77
COL9A1P20849 LINC01355-201ENST00000566551 5444 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL9A1P20849 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-34-201ENST00000362441 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-12-201ENST00000362583 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-29-201ENST00000362834 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-9-201ENST00000362912 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-21-201ENST00000362963 81 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-14-201ENST00000363090 81 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-41-201ENST00000363608 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-11-201ENST00000363616 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-5-201ENST00000363633 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-39-201ENST00000363694 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-4-201ENST00000363810 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-6-201ENST00000363942 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-42-201ENST00000364273 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 Y_RNA.241-201ENST00000364470 117 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-15-201ENST00000364809 81 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-26-201ENST00000365067 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-10-201ENST00000365073 81 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-43-201ENST00000365503 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORD115-36-201ENST00000365629 82 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 RNU6-616P-201ENST00000384353 107 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 SNORA8-201ENST00000384574 139 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 AC017083.1-201ENST00000428093 483 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 CYP2C59P-201ENST00000457790 269 ntBASIC3.99□□□□□ -1.77
COL9A1P20849 RNU2-27P-201ENST00000516185 142 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 195.3 ms