Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC005786.1-201ENST00000588553 154 ntBASIC1.78□□□□□ -2.12
MSH3P20585 AC127459.3-201ENST00000624328 466 ntBASIC1.78□□□□□ -2.12
MSH3P20585 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.12
MSH3P20585 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 AC245060.5-201ENST00000610778 3293 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RNU4-90P-201ENST00000362773 141 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RNU6-862P-201ENST00000362804 105 ntBASIC1.77□□□□□ -2.13
MSH3P20585 Y_RNA.541-201ENST00000384640 113 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR9-3-201ENST00000385084 90 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR873-201ENST00000401120 77 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR1253-201ENST00000408273 105 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RNU6-1203P-201ENST00000410703 110 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RPL31P63-201ENST00000422565 375 ntBASIC1.77□□□□□ -2.13
MSH3P20585 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.77□□□□□ -2.13
MSH3P20585 AC027419.1-201ENST00000522976 328 ntBASIC1.77□□□□□ -2.13
MSH3P20585 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.77□□□□□ -2.13
MSH3P20585 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 MIR4419B-201ENST00000577260 68 ntBASIC1.77□□□□□ -2.13
MSH3P20585 AC024614.2-201ENST00000577584 372 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR6845-201ENST00000613182 61 ntBASIC1.77□□□□□ -2.13
MSH3P20585 Y_RNA.124-201ENST00000363339 93 ntBASIC1.76□□□□□ -2.13
MSH3P20585 Y_RNA.329-201ENST00000365209 107 ntBASIC1.76□□□□□ -2.13
MSH3P20585 Y_RNA.383-201ENST00000383855 97 ntBASIC1.76□□□□□ -2.13
MSH3P20585 RNU6-417P-201ENST00000384712 107 ntBASIC1.76□□□□□ -2.13
MSH3P20585 MT-TW-201ENST00000387382 68 ntBASIC1.76□□□□□ -2.13
MSH3P20585 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
MSH3P20585 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
MSH3P20585 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.76□□□□□ -2.13
MSH3P20585 RPS29P11-201ENST00000496507 171 ntBASIC1.76□□□□□ -2.13
MSH3P20585 RNU6-570P-201ENST00000517051 105 ntBASIC1.76□□□□□ -2.13
MSH3P20585 AL137100.2-201ENST00000555786 315 ntBASIC1.76□□□□□ -2.13
MSH3P20585 MIR3618-201ENST00000580330 88 ntBASIC1.76□□□□□ -2.13
MSH3P20585 AL773524.1-201ENST00000614065 229 ntBASIC1.76□□□□□ -2.13
MSH3P20585 U6.73-201ENST00000619194 103 ntBASIC1.76□□□□□ -2.13
MSH3P20585 AC084768.2-201ENST00000622736 221 ntBASIC1.76□□□□□ -2.13
MSH3P20585 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
MSH3P20585 RNU6-271P-201ENST00000363858 105 ntBASIC1.75□□□□□ -2.13
MSH3P20585 RNU6-290P-201ENST00000365212 101 ntBASIC1.75□□□□□ -2.13
MSH3P20585 RNU6-472P-201ENST00000384299 107 ntBASIC1.75□□□□□ -2.13
MSH3P20585 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
MSH3P20585 RNU2-61P-201ENST00000411069 191 ntBASIC1.75□□□□□ -2.13
MSH3P20585 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.75□□□□□ -2.13
MSH3P20585 CST2P1-201ENST00000425770 87 ntBASIC1.75□□□□□ -2.13
MSH3P20585 RNA5SP20-201ENST00000515976 84 ntBASIC1.75□□□□□ -2.13
MSH3P20585 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
MSH3P20585 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.16-201ENST00000362421 102 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.136-201ENST00000363444 102 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.144-201ENST00000363521 113 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU6-324P-201ENST00000363957 106 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU1-96P-201ENST00000364163 162 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.396-201ENST00000383949 103 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.418-201ENST00000384029 102 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU6-463P-201ENST00000384340 107 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.483-201ENST00000384380 101 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.518-201ENST00000384552 113 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA8-201ENST00000384574 139 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.569-201ENST00000384749 103 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA48.1-201ENST00000390879 135 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNA5SP467-201ENST00000391274 118 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA26.9-201ENST00000391322 122 ntBASIC1.74□□□□□ -2.13
MSH3P20585 MIR1302-6-201ENST00000408466 90 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNA5SP501-201ENST00000410990 112 ntBASIC1.74□□□□□ -2.13
MSH3P20585 POLR2KP2-201ENST00000438155 177 ntBASIC1.74□□□□□ -2.13
MSH3P20585 MRPS10P1-201ENST00000448483 130 ntBASIC1.74□□□□□ -2.13
MSH3P20585 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.74□□□□□ -2.13
MSH3P20585 TRBVB-201ENST00000477100 408 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RPS27P22-201ENST00000478056 241 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA70.12-201ENST00000516084 153 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNVU1-2-201ENST00000516326 135 ntBASIC1.74□□□□□ -2.13
MSH3P20585 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.74□□□□□ -2.13
MSH3P20585 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.74□□□□□ -2.13
MSH3P20585 AC023157.2-201ENST00000540596 141 ntBASIC1.74□□□□□ -2.13
MSH3P20585 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.74□□□□□ -2.13
MSH3P20585 MIR4503-201ENST00000582187 83 ntBASIC1.74□□□□□ -2.13
MSH3P20585 MIR4438-201ENST00000585271 93 ntBASIC1.74□□□□□ -2.13
MSH3P20585 DEFB117-201ENST00000602356 141 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.74□□□□□ -2.13
MSH3P20585 U6.104-201ENST00000637979 90 ntBASIC1.74□□□□□ -2.13
MSH3P20585 AC010615.1-201ENST00000594254 1764 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU1-22P-201ENST00000363334 158 ntBASIC1.73□□□□□ -2.13
MSH3P20585 SNORA33-201ENST00000363664 130 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU6-407P-201ENST00000365280 104 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU6-326P-201ENST00000365480 107 ntBASIC1.73□□□□□ -2.13
MSH3P20585 Y_RNA.461-201ENST00000384263 103 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU6-505P-201ENST00000384427 107 ntBASIC1.73□□□□□ -2.13
MSH3P20585 Y_RNA.556-201ENST00000384677 113 ntBASIC1.73□□□□□ -2.13
MSH3P20585 MIR504-201ENST00000385065 83 ntBASIC1.73□□□□□ -2.13
MSH3P20585 MIR1302-3-201ENST00000408128 138 ntBASIC1.73□□□□□ -2.13
MSH3P20585 AC244636.1-201ENST00000421152 228 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RPL23AP6-201ENST00000446637 472 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RPS26P55-201ENST00000471178 356 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU7-128P-201ENST00000517247 62 ntBASIC1.73□□□□□ -2.13
MSH3P20585 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.73□□□□□ -2.13
MSH3P20585 AP001282.2-201ENST00000616149 309 ntBASIC1.73□□□□□ -2.13
MSH3P20585 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.73□□□□□ -2.13
MSH3P20585 7SK.10-201ENST00000621414 298 ntBASIC1.73□□□□□ -2.13
MSH3P20585 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms