Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.02□□□□□ -2.09
USP44Q9H0E7 SNORA40.9-201ENST00000515895 93 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 RNU6-1012P-201ENST00000516606 109 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 RNU6-988P-201ENST00000519081 107 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 GNAI2P1-201ENST00000541815 315 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 AC022432.1-201ENST00000595739 310 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 AC091932.3-201ENST00000624223 323 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 MIR338-201ENST00000636369 67 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 U6.92-201ENST00000636464 89 ntBASIC2.02□□□□□ -2.09
USP44Q9H0E7 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 RNA5SP276-201ENST00000362580 94 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 Y_RNA.498-201ENST00000384460 102 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 RPL26P26-201ENST00000480251 434 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 RNU6-1041P-201ENST00000516254 102 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 AC018448.1-201ENST00000552843 316 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 MIR4299-201ENST00000577899 72 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 MIR4713-201ENST00000582691 75 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 AC011476.5-201ENST00000615594 130 ntBASIC2.01□□□□□ -2.09
USP44Q9H0E7 RNU6-961P-201ENST00000363893 105 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 RNU1-96P-201ENST00000364163 162 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 SNORD78.2-201ENST00000391076 69 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 MRPL42P3-201ENST00000401492 326 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 AL117342.1-201ENST00000404861 406 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 RN7SKP101-201ENST00000411376 320 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 RNVU1-2-201ENST00000516326 135 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 RNU6-107P-201ENST00000516643 102 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 AP002001.1-203ENST00000534002 267 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2□□□□□ -2.09
USP44Q9H0E7 AC022254.1-201ENST00000567857 235 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 MIR4659A-201ENST00000580269 81 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 MIR4303-201ENST00000581299 66 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 AC104695.3-201ENST00000604052 296 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 DLEU2_2.2-201ENST00000615474 90 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 AC022513.1-201ENST00000624512 117 ntBASIC2□□□□□ -2.09
USP44Q9H0E7 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2□□□□□ -2.09
USP44Q9H0E7 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
USP44Q9H0E7 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
USP44Q9H0E7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
USP44Q9H0E7 SNORD14.1-201ENST00000365609 90 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 Y_RNA.526-201ENST00000384572 110 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 FCF1P4-201ENST00000448326 183 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 RNU6-625P-201ENST00000459412 107 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 AC093852.1-201ENST00000503587 266 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 RNU6-408P-201ENST00000515910 100 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 RNA5SP481-201ENST00000516814 122 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 AC040926.1-201ENST00000530195 238 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.99□□□□□ -2.09
USP44Q9H0E7 AL137100.2-201ENST00000555786 315 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.99□□□□□ -2.09
USP44Q9H0E7 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.99□□□□□ -2.09
USP44Q9H0E7 AC016925.2-201ENST00000605108 242 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 AC240442.1-201ENST00000616055 283 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.99□□□□□ -2.09
USP44Q9H0E7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
USP44Q9H0E7 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.98□□□□□ -2.09
USP44Q9H0E7 SNORD114-7-201ENST00000362520 77 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 RNU6-862P-201ENST00000362804 105 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 Y_RNA.202-201ENST00000364083 110 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 MIR520A-201ENST00000384862 85 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
USP44Q9H0E7 MIR676-201ENST00000390702 67 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 RNA5SP475-201ENST00000410568 110 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 RNA5SP100-201ENST00000410903 110 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 RNA5SP59-201ENST00000410922 110 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 AC010154.1-201ENST00000425857 269 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 SDAD1P3-201ENST00000427380 333 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 RAB28P5-201ENST00000427490 651 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 FTH1P12-201ENST00000432137 551 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.98□□□□□ -2.09
USP44Q9H0E7 RNA5SP57-201ENST00000459463 123 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 AC010598.1-201ENST00000510378 103 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 SNORA44.1-201ENST00000517031 108 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 MIR5094-201ENST00000578766 85 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 RPS29P30-201ENST00000600975 111 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 AC006001.4-201ENST00000622243 395 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.98□□□□□ -2.09
USP44Q9H0E7 AC010615.1-201ENST00000594254 1764 ntBASIC1.98□□□□□ -2.09
USP44Q9H0E7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
USP44Q9H0E7 SNORA33.2-201ENST00000365413 134 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 Y_RNA.458-201ENST00000384240 102 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 RNU6-1011P-201ENST00000384668 107 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 SNORA67.5-201ENST00000391036 107 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 RNU6-823P-201ENST00000391042 103 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 MRPL35P1-201ENST00000404272 572 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 AC016909.1-201ENST00000415916 166 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.97□□□□□ -2.09
USP44Q9H0E7 AC099677.2-201ENST00000436385 175 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 HMGN2P34-201ENST00000437647 269 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 RNU6-1137P-201ENST00000517073 99 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.97□□□□□ -2.09
USP44Q9H0E7 AP003072.1-201ENST00000531740 145 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.97□□□□□ -2.09
USP44Q9H0E7 AL645939.4-201ENST00000604495 135 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 AC040896.1-201ENST00000613819 479 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.97□□□□□ -2.09
USP44Q9H0E7 AC245060.5-201ENST00000610778 3293 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 246.6 ms