Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.15□□□□□ -2.23
MSH4O15457 SNORD5.1-201ENST00000458800 75 ntBASIC1.15□□□□□ -2.23
MSH4O15457 MTND4P17-201ENST00000470444 350 ntBASIC1.15□□□□□ -2.23
MSH4O15457 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.15□□□□□ -2.23
MSH4O15457 RPL7P42-201ENST00000481005 679 ntBASIC1.15□□□□□ -2.23
MSH4O15457 AC026782.1-201ENST00000512952 449 ntBASIC1.15□□□□□ -2.23
MSH4O15457 Y_RNA.670-201ENST00000516255 105 ntBASIC1.15□□□□□ -2.23
MSH4O15457 RNU7-99P-201ENST00000516271 62 ntBASIC1.15□□□□□ -2.23
MSH4O15457 Y_RNA.683-201ENST00000516508 93 ntBASIC1.15□□□□□ -2.23
MSH4O15457 SUMO2P16-201ENST00000519475 264 ntBASIC1.15□□□□□ -2.23
MSH4O15457 AC027419.1-201ENST00000522976 328 ntBASIC1.15□□□□□ -2.23
MSH4O15457 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.15□□□□□ -2.23
MSH4O15457 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.15□□□□□ -2.23
MSH4O15457 AL512310.8-201ENST00000550183 120 ntBASIC1.15□□□□□ -2.23
MSH4O15457 AC019288.1-201ENST00000557918 224 ntBASIC1.15□□□□□ -2.23
MSH4O15457 Y_RNA.106-201ENST00000363189 100 ntBASIC1.14□□□□□ -2.23
MSH4O15457 RNU4-38P-201ENST00000364472 129 ntBASIC1.14□□□□□ -2.23
MSH4O15457 Y_RNA.269-201ENST00000364685 89 ntBASIC1.14□□□□□ -2.23
MSH4O15457 RNU1-93P-201ENST00000364704 169 ntBASIC1.14□□□□□ -2.23
MSH4O15457 Y_RNA.355-201ENST00000365462 98 ntBASIC1.14□□□□□ -2.23
MSH4O15457 RNU6-767P-201ENST00000384132 107 ntBASIC1.14□□□□□ -2.23
MSH4O15457 Y_RNA.508-201ENST00000384502 114 ntBASIC1.14□□□□□ -2.23
MSH4O15457 RNU1-139P-201ENST00000391307 165 ntBASIC1.14□□□□□ -2.23
MSH4O15457 MRPL42P3-201ENST00000401492 326 ntBASIC1.14□□□□□ -2.23
MSH4O15457 Y_RNA.594-201ENST00000410373 140 ntBASIC1.14□□□□□ -2.23
MSH4O15457 AC074085.1-201ENST00000413598 418 ntBASIC1.14□□□□□ -2.23
MSH4O15457 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.14□□□□□ -2.23
MSH4O15457 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.14□□□□□ -2.23
MSH4O15457 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.14□□□□□ -2.23
MSH4O15457 RNU6-1213P-201ENST00000517075 94 ntBASIC1.14□□□□□ -2.23
MSH4O15457 AC093023.1-201ENST00000547375 507 ntBASIC1.14□□□□□ -2.23
MSH4O15457 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.14□□□□□ -2.23
MSH4O15457 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.14□□□□□ -2.23
MSH4O15457 MIR4438-201ENST00000585271 93 ntBASIC1.14□□□□□ -2.23
MSH4O15457 AC018462.2-201ENST00000605375 395 ntBASIC1.14□□□□□ -2.23
MSH4O15457 Y_RNA.339-201ENST00000365325 102 ntBASIC1.13□□□□□ -2.23
MSH4O15457 Y_RNA.390-201ENST00000383932 102 ntBASIC1.13□□□□□ -2.23
MSH4O15457 RNU6-281P-201ENST00000384212 103 ntBASIC1.13□□□□□ -2.23
MSH4O15457 RNU6-440P-201ENST00000390882 105 ntBASIC1.13□□□□□ -2.23
MSH4O15457 RNU6-1050P-201ENST00000410388 107 ntBASIC1.13□□□□□ -2.23
MSH4O15457 RNU4-14P-201ENST00000410858 122 ntBASIC1.13□□□□□ -2.23
MSH4O15457 PDCL2P1-201ENST00000419302 352 ntBASIC1.13□□□□□ -2.23
MSH4O15457 TOMM22P2-201ENST00000430735 237 ntBASIC1.13□□□□□ -2.23
MSH4O15457 AL353997.1-201ENST00000432936 108 ntBASIC1.13□□□□□ -2.23
MSH4O15457 MTND3P10-201ENST00000450967 341 ntBASIC1.13□□□□□ -2.23
MSH4O15457 SNORD65B-201ENST00000459126 73 ntBASIC1.13□□□□□ -2.23
MSH4O15457 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.13□□□□□ -2.23
MSH4O15457 AC023157.2-201ENST00000540596 141 ntBASIC1.13□□□□□ -2.23
MSH4O15457 AC004584.2-201ENST00000570407 410 ntBASIC1.13□□□□□ -2.23
MSH4O15457 AL390123.1-201ENST00000603216 237 ntBASIC1.13□□□□□ -2.23
MSH4O15457 AC009229.3-201ENST00000608056 282 ntBASIC1.13□□□□□ -2.23
MSH4O15457 AC122108.2-201ENST00000611946 526 ntBASIC1.13□□□□□ -2.23
MSH4O15457 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
MSH4O15457 RNU6-845P-201ENST00000362578 103 ntBASIC1.12□□□□□ -2.23
MSH4O15457 Y_RNA.72-201ENST00000362894 103 ntBASIC1.12□□□□□ -2.23
MSH4O15457 Y_RNA.88-201ENST00000363029 99 ntBASIC1.12□□□□□ -2.23
MSH4O15457 Y_RNA.404-201ENST00000383978 102 ntBASIC1.12□□□□□ -2.23
MSH4O15457 RNU6-601P-201ENST00000384540 107 ntBASIC1.12□□□□□ -2.23
MSH4O15457 MIR518E-201ENST00000385252 88 ntBASIC1.12□□□□□ -2.23
MSH4O15457 RPL37P10-201ENST00000412884 288 ntBASIC1.12□□□□□ -2.23
MSH4O15457 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.12□□□□□ -2.23
MSH4O15457 PGBD4P5-201ENST00000445958 426 ntBASIC1.12□□□□□ -2.23
MSH4O15457 RPS29P28-201ENST00000446439 141 ntBASIC1.12□□□□□ -2.23
MSH4O15457 MRPS10P1-201ENST00000448483 130 ntBASIC1.12□□□□□ -2.23
MSH4O15457 AC107399.1-201ENST00000451226 265 ntBASIC1.12□□□□□ -2.23
MSH4O15457 RPS27P22-201ENST00000478056 241 ntBASIC1.12□□□□□ -2.23
MSH4O15457 RNU6-120P-201ENST00000516077 103 ntBASIC1.12□□□□□ -2.23
MSH4O15457 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.12□□□□□ -2.23
MSH4O15457 AL021879.1-201ENST00000611756 288 ntBASIC1.12□□□□□ -2.23
MSH4O15457 MTND5P16-201ENST00000460269 1703 ntBASIC1.12□□□□□ -2.23
MSH4O15457 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
MSH4O15457 Y_RNA.279-201ENST00000364763 95 ntBASIC1.11□□□□□ -2.23
MSH4O15457 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
MSH4O15457 AL034345.1-201ENST00000407768 123 ntBASIC1.11□□□□□ -2.23
MSH4O15457 RNU6-1001P-201ENST00000411265 100 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.11□□□□□ -2.23
MSH4O15457 RNU7-87P-201ENST00000459343 62 ntBASIC1.11□□□□□ -2.23
MSH4O15457 RNU7-94P-201ENST00000459576 63 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AC010469.2-201ENST00000496412 480 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AC010598.1-201ENST00000510378 103 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.11□□□□□ -2.23
MSH4O15457 RNU6-1016P-201ENST00000516689 94 ntBASIC1.11□□□□□ -2.23
MSH4O15457 RN7SKP88-201ENST00000516847 250 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.11□□□□□ -2.23
MSH4O15457 AL121579.1-201ENST00000555129 305 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AC090617.3-201ENST00000573670 475 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AC005014.2-201ENST00000607795 599 ntBASIC1.11□□□□□ -2.23
MSH4O15457 7SK.8-201ENST00000612110 250 ntBASIC1.11□□□□□ -2.23
MSH4O15457 7SK.11-201ENST00000615477 250 ntBASIC1.11□□□□□ -2.23
MSH4O15457 MIR8065-201ENST00000620577 100 ntBASIC1.11□□□□□ -2.23
MSH4O15457 7SK.13-201ENST00000622040 250 ntBASIC1.11□□□□□ -2.23
MSH4O15457 AC006435.5-201ENST00000624486 112 ntBASIC1.11□□□□□ -2.23
MSH4O15457 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
MSH4O15457 RNA5SP327-201ENST00000362494 101 ntBASIC1.1□□□□□ -2.23
MSH4O15457 SNORD81.2-201ENST00000365153 76 ntBASIC1.1□□□□□ -2.23
MSH4O15457 MIR222-201ENST00000384992 110 ntBASIC1.1□□□□□ -2.23
MSH4O15457 RNU6-700P-201ENST00000391043 107 ntBASIC1.1□□□□□ -2.23
MSH4O15457 MIR190B-201ENST00000401119 79 ntBASIC1.1□□□□□ -2.23
MSH4O15457 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.1□□□□□ -2.23
MSH4O15457 UQCRBP2-201ENST00000447827 297 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 208.1 ms