Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 BX284668.6-201ENST00000606899 438 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.4-201ENST00000362333 112 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 RNU4-12P-201ENST00000365233 139 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 RNU6-53P-201ENST00000365367 106 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 RNU6-1013P-201ENST00000384180 107 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.450-201ENST00000384198 113 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 RNU6-842P-201ENST00000384269 107 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 STAG3L5P-204ENST00000443759 179 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 MRPS10P1-201ENST00000448483 130 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 RNU6-922P-201ENST00000516753 99 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.706-201ENST00000516933 99 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.24□□□□□ -2.21
CCDC43Q96MW1 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC43Q96MW1 MIR4778-201ENST00000577635 80 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 AL022345.2-201ENST00000606307 135 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 AC068137.4-201ENST00000638485 296 ntBASIC1.24□□□□□ -2.21
CCDC43Q96MW1 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
CCDC43Q96MW1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.106-201ENST00000363189 100 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.295-201ENST00000364918 102 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.490-201ENST00000384413 102 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 RNU6-505P-201ENST00000384427 107 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 MIR660-201ENST00000385235 97 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 USP9YP16-201ENST00000430287 407 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 MTATP6P26-201ENST00000445926 662 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 USP9YP23-201ENST00000455085 407 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 COX6CP14-201ENST00000469580 174 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 HMGN1P7-201ENST00000491722 313 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 RNU6-1114P-201ENST00000516022 107 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 AC093023.1-201ENST00000547375 507 ntBASIC1.23□□□□□ -2.21
CCDC43Q96MW1 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.23□□□□□ -2.21
CCDC43Q96MW1 RNU4-76P-201ENST00000364509 141 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 RNU1-139P-201ENST00000391307 165 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
CCDC43Q96MW1 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.22□□□□□ -2.21
CCDC43Q96MW1 MTND1P17-201ENST00000448961 204 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC43Q96MW1 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC43Q96MW1 CYCSP23-201ENST00000519781 313 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 CBX3P8-201ENST00000532412 525 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 AL513534.2-201ENST00000603836 250 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 AC080078.3-201ENST00000605407 463 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 AC100812.1-201ENST00000607622 580 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 AC006435.5-201ENST00000624486 112 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 MIR6079-201ENST00000635807 62 ntBASIC1.22□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.573-201ENST00000384763 105 ntBASIC1.21□□□□□ -2.22
CCDC43Q96MW1 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.21□□□□□ -2.22
CCDC43Q96MW1 RNU7-172P-201ENST00000517125 64 ntBASIC1.21□□□□□ -2.22
CCDC43Q96MW1 SNORA28-201ENST00000606769 126 ntBASIC1.21□□□□□ -2.22
CCDC43Q96MW1 AC027335.2-201ENST00000624030 375 ntBASIC1.21□□□□□ -2.22
CCDC43Q96MW1 MIR3662-201ENST00000637030 95 ntBASIC1.21□□□□□ -2.22
CCDC43Q96MW1 MTND5P16-201ENST00000460269 1703 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 Y_RNA.157-201ENST00000363638 102 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 Y_RNA.301-201ENST00000364990 103 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 SNORA20B-201ENST00000384220 132 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
CCDC43Q96MW1 AL355796.1-201ENST00000406706 323 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 HSPE1P13-201ENST00000451143 297 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 SNORD5.1-201ENST00000458800 75 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC43Q96MW1 AC097462.1-201ENST00000514125 324 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 RNA5SP168-201ENST00000516642 112 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 SNORA70.22-201ENST00000517160 124 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 AL133216.2-202ENST00000634512 349 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.2□□□□□ -2.22
CCDC43Q96MW1 Y_RNA.3-201ENST00000362331 103 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 RNU1-22P-201ENST00000363334 158 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 Y_RNA.265-201ENST00000364677 108 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 SNORA70.7-201ENST00000384159 133 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 MIR222-201ENST00000384992 110 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 RNA5SP118-201ENST00000410385 109 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 RNU6-1001P-201ENST00000411265 100 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 MTCO3P19-201ENST00000415864 321 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC43Q96MW1 RAB28P5-201ENST00000427490 651 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC43Q96MW1 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC43Q96MW1 AC046134.1-201ENST00000514454 666 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 SNORD116-28-201ENST00000516123 91 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 AC090617.3-201ENST00000573670 475 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 MIR4790-201ENST00000577799 79 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 AC093913.1-201ENST00000614178 329 ntBASIC1.19□□□□□ -2.22
CCDC43Q96MW1 RNU6-199P-201ENST00000362954 107 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 MIR329-1-201ENST00000385028 80 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 AL589823.1-201ENST00000429577 183 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 CALM2P4-201ENST00000430810 426 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 AC048334.1-201ENST00000477975 159 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 AC018710.1-201ENST00000506509 158 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 RNU4-49P-201ENST00000516080 140 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 RNU6-720P-201ENST00000516363 108 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC43Q96MW1 AL121579.1-201ENST00000555129 305 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 RPL21P9-201ENST00000556149 474 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 EIF1P4-201ENST00000572664 335 ntBASIC1.18□□□□□ -2.22
CCDC43Q96MW1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC43Q96MW1 RNU6-623P-201ENST00000363143 105 ntBASIC1.17□□□□□ -2.22
CCDC43Q96MW1 RNU1-124P-201ENST00000363861 145 ntBASIC1.17□□□□□ -2.22
CCDC43Q96MW1 Y_RNA.267-201ENST00000364679 109 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 194.4 ms