Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC015540.1-201ENST00000615828 501 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC43Q96MW1 AC099654.5-201ENST00000636479 350 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 AC068647.2-201ENST00000637380 353 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 MIR10B-201ENST00000385011 110 ntBASIC1.31□□□□□ -2.2
CCDC43Q96MW1 MIR181A1-201ENST00000385026 110 ntBASIC1.31□□□□□ -2.2
CCDC43Q96MW1 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC43Q96MW1 PGBD4P5-201ENST00000445958 426 ntBASIC1.31□□□□□ -2.2
CCDC43Q96MW1 MTND4P18-201ENST00000447010 465 ntBASIC1.31□□□□□ -2.2
CCDC43Q96MW1 SNORD65B-201ENST00000459126 73 ntBASIC1.31□□□□□ -2.2
CCDC43Q96MW1 RN7SKP179-201ENST00000516126 217 ntBASIC1.31□□□□□ -2.2
CCDC43Q96MW1 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC43Q96MW1 AC004584.2-201ENST00000570407 410 ntBASIC1.31□□□□□ -2.2
CCDC43Q96MW1 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC43Q96MW1 RNU5F-3P-201ENST00000363767 117 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.554-201ENST00000384672 102 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC016907.1-201ENST00000419483 435 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC43Q96MW1 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC43Q96MW1 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC43Q96MW1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC093852.1-201ENST00000503587 266 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC093303.1-201ENST00000514549 295 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 RNU6-1088P-201ENST00000516850 104 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC091144.1-201ENST00000519573 138 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AL590705.4-201ENST00000532209 134 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 MIR5695-201ENST00000579717 85 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC010999.1-201ENST00000611856 324 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 AC100810.6-201ENST00000638068 285 ntBASIC1.3□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.9-201ENST00000362354 101 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 RNY4P14-201ENST00000363656 96 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 RNU6-1059P-201ENST00000363752 98 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.184-201ENST00000363884 108 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 RNU6-392P-201ENST00000364926 101 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.436-201ENST00000384097 102 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 AL034345.1-201ENST00000407768 123 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 RNU6-864P-201ENST00000516256 108 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 RNU6-107P-201ENST00000516643 102 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 RNU6-1314P-201ENST00000517139 104 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 AC106754.2-201ENST00000623006 233 ntBASIC1.29□□□□□ -2.2
CCDC43Q96MW1 RNU6-595P-201ENST00000363944 107 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 RNU6-596P-201ENST00000365395 98 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 RNU6-831P-201ENST00000384548 107 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 SNORA12.1-201ENST00000390873 148 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 MIR1285-1-201ENST00000408593 84 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 RPL39P38-201ENST00000467018 153 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 RPS27P22-201ENST00000478056 241 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 RNU7-40P-201ENST00000516397 64 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 APOOP3-201ENST00000536787 586 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 AC023157.2-201ENST00000540596 141 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.28□□□□□ -2.2
CCDC43Q96MW1 MIR4438-201ENST00000585271 93 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 SNORD3E-202ENST00000627253 216 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
CCDC43Q96MW1 ZNF299P-201ENST00000406845 1804 ntBASIC1.28□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.48-201ENST00000362710 103 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 RNU6-1148P-201ENST00000410992 104 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 USP9YP30-201ENST00000430729 455 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 DYNLT3P2-201ENST00000442517 295 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 AC092991.1-201ENST00000477176 376 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 AC010469.2-201ENST00000496412 480 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 RNU6-165P-201ENST00000517170 99 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.27□□□□□ -2.21
CCDC43Q96MW1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.27□□□□□ -2.21
CCDC43Q96MW1 MIR4295-201ENST00000585286 85 ntBASIC1.27□□□□□ -2.21
CCDC43Q96MW1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CCDC43Q96MW1 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.89-201ENST00000363031 102 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 RNU6-281P-201ENST00000384212 103 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 RPL37P10-201ENST00000412884 288 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 USMG5P1-201ENST00000425964 177 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 MTND3P23-201ENST00000431980 347 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 MTND4LP16-201ENST00000440828 295 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 RNU7-94P-201ENST00000459576 63 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 AC087343.1-201ENST00000477341 475 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 RNU6-566P-201ENST00000516790 107 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 RNA5SP404-201ENST00000517118 132 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC43Q96MW1 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC43Q96MW1 MIR4781-201ENST00000585250 76 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 AC012557.2-201ENST00000605919 418 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC43Q96MW1 MIR6128-201ENST00000615528 109 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 AC073349.3-201ENST00000617616 186 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 AL513423.1-201ENST00000621695 132 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC43Q96MW1 AC018630.2-201ENST00000534866 2403 ntBASIC1.26□□□□□ -2.21
CCDC43Q96MW1 RNU6-222P-201ENST00000362438 107 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.164-201ENST00000363709 102 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 SNORA25-201ENST00000384384 134 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 AC009161.1-201ENST00000417306 376 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 AL591704.2-201ENST00000421658 181 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.25□□□□□ -2.21
CCDC43Q96MW1 OR2A41P-201ENST00000473586 105 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 AC010598.1-201ENST00000510378 103 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 Y_RNA.683-201ENST00000516508 93 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 RNU1-54P-201ENST00000517181 120 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 AL162424.1-201ENST00000602325 221 ntBASIC1.25□□□□□ -2.21
CCDC43Q96MW1 AC080013.6-201ENST00000606185 215 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 232.2 ms