Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 Y_RNA.307-201ENST00000365022 117 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.383-201ENST00000383855 97 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.447-201ENST00000384184 113 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.476-201ENST00000384347 108 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.489-201ENST00000384410 101 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 MIR548H3-201ENST00000408771 118 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 RNU2-38P-201ENST00000410856 79 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 RNA5SP508-201ENST00000411327 119 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 POLR2KP2-201ENST00000438155 177 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-1271P-201ENST00000517049 105 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 AC012433.1-201ENST00000588916 398 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 AC013412.1-201ENST00000610687 192 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 AC010297.1-201ENST00000623948 149 ntBASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.16-201ENST00000362421 102 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-743P-201ENST00000364151 106 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.352-201ENST00000365439 102 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.361-201ENST00000365515 120 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 U3.40-201ENST00000408706 208 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 EDDM3CP-201ENST00000415977 425 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 SUMO1P4-201ENST00000429430 302 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 RNA5SP320-201ENST00000516263 124 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-966P-201ENST00000516479 104 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 U6.115-201ENST00000636045 103 ntBASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PTCHD3Q3KNS1 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 SNORD115-30-201ENST00000364117 82 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-418P-201ENST00000384035 107 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 MIR27B-201ENST00000385129 97 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-1248P-201ENST00000391096 64 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 AC008134.1-201ENST00000420943 193 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 PRELID3BP1-201ENST00000457142 540 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 AC010531.2-201ENST00000465012 153 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 AC008413.1-201ENST00000511864 177 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-436P-201ENST00000516171 114 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 CYCSP26-201ENST00000534107 320 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 MIR5194-201ENST00000582634 120 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 AL137847.3-201ENST00000611521 109 ntBASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
PTCHD3Q3KNS1 AL159152.1-201ENST00000635019 2587 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.20-201ENST00000362479 113 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.99-201ENST00000363138 105 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 RNA5SP393-201ENST00000363423 117 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 RNA5SP456-201ENST00000364002 114 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 DEFA7P-201ENST00000382676 285 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.416-201ENST00000384014 113 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 RN7SKP284-201ENST00000411002 343 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 SNORA4.4-201ENST00000515921 135 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-1023P-201ENST00000516137 106 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-991P-201ENST00000516168 107 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 SNORA31.15-201ENST00000516771 132 ntBASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
PTCHD3Q3KNS1 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.418-201ENST00000384029 102 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 SNORD58.1-201ENST00000391313 66 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AL031003.1-201ENST00000404229 172 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-57P-201ENST00000411348 103 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AC024067.1-201ENST00000426199 223 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 RPS12P2-201ENST00000439728 269 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AC016717.1-201ENST00000448918 286 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 RNU7-26P-201ENST00000458980 63 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AC010598.1-201ENST00000510378 103 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 MTND1P19-201ENST00000511780 315 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 SNORA70.12-201ENST00000516084 153 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AC025647.1-201ENST00000517879 253 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AC091544.4-201ENST00000555268 342 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 MIR3128-201ENST00000581957 66 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AC025754.2-201ENST00000606491 432 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 AC006435.5-201ENST00000624486 112 ntBASIC2.41□□□□□ -2.02
PTCHD3Q3KNS1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
PTCHD3Q3KNS1 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
PTCHD3Q3KNS1 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 MIR340-201ENST00000362125 95 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-1266P-201ENST00000362794 105 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-379P-201ENST00000363813 104 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 SNORA38-201ENST00000363946 132 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-1072P-201ENST00000384703 107 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-443P-201ENST00000384780 107 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 242.7 ms