Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 MIR449A-201ENST00000362113 91 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 RNU6-219P-201ENST00000364728 107 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 RNU1-44P-201ENST00000384453 163 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 RNA5SP120-201ENST00000410900 112 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 HMGN2P34-201ENST00000437647 269 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 AC087499.4-201ENST00000448505 178 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 RNA5SP246-201ENST00000458909 119 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 RPS29P19-201ENST00000479709 171 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 RN7SL271P-201ENST00000487601 295 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 RNU6-1018P-201ENST00000516577 106 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 SNORD36C-201ENST00000516733 66 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 SNORA18.7-201ENST00000516910 131 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC4.23□□□□□ -1.73
COL9A1P20849 MIR4769-201ENST00000584126 77 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 MIR7151-201ENST00000617477 60 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC4.23□□□□□ -1.73
COL9A1P20849 MIR6079-201ENST00000635807 62 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 MIR203B-201ENST00000636080 86 ntBASIC4.23□□□□□ -1.73
COL9A1P20849 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.23□□□□□ -1.73
COL9A1P20849 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.22□□□□□ -1.73
COL9A1P20849 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.22□□□□□ -1.73
COL9A1P20849 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.22□□□□□ -1.73
COL9A1P20849 SNORD14E-201ENST00000364009 85 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 RNU4-67P-201ENST00000364569 141 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 SNORA14A-201ENST00000364773 135 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 Y_RNA.547-201ENST00000384654 119 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC4.22□□□□□ -1.73
COL9A1P20849 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.22□□□□□ -1.73
COL9A1P20849 RPS23P4-201ENST00000487908 423 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 RNA5SP360-201ENST00000516555 118 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 MIR4777-201ENST00000583710 86 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 AC006023.1-201ENST00000603944 259 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 AC091932.4-201ENST00000623386 200 ntBASIC4.22□□□□□ -1.73
COL9A1P20849 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL9A1P20849 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.22□□□□□ -1.73
COL9A1P20849 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.22□□□□□ -1.73
COL9A1P20849 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.22□□□□□ -1.73
COL9A1P20849 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC4.21□□□□□ -1.73
COL9A1P20849 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.21□□□□□ -1.73
COL9A1P20849 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL9A1P20849 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.21□□□□□ -1.74
COL9A1P20849 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL9A1P20849 Y_RNA.190-201ENST00000363964 101 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 Y_RNA.267-201ENST00000364679 109 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 AL627390.1-201ENST00000396055 340 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 HSPE1P26-201ENST00000405341 275 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 RNU6-887P-201ENST00000410660 100 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 RPL23AP46-201ENST00000438548 490 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.21□□□□□ -1.74
COL9A1P20849 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.21□□□□□ -1.74
COL9A1P20849 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.21□□□□□ -1.74
COL9A1P20849 MIR3936-201ENST00000584304 110 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 RPL12P50-201ENST00000603116 116 ntBASIC4.21□□□□□ -1.74
COL9A1P20849 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL9A1P20849 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
COL9A1P20849 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL9A1P20849 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL9A1P20849 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL9A1P20849 Z82217.1-201ENST00000625157 8149 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 Y_RNA.377-201ENST00000365644 108 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 RPL32P35-201ENST00000415214 394 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.2□□□□□ -1.74
COL9A1P20849 RNU6-267P-201ENST00000516714 103 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 AP003484.1-201ENST00000530974 250 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 MIR4472-2-201ENST00000582069 67 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 AC078899.2-201ENST00000595282 212 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 MIR1248-201ENST00000629190 106 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 MIR1255B1-201ENST00000636325 63 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL9A1P20849 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL9A1P20849 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.2□□□□□ -1.74
COL9A1P20849 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
COL9A1P20849 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL9A1P20849 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL9A1P20849 MAPK10-286ENST00000641208 8747 ntBASIC4.2□□□□□ -1.74
COL9A1P20849 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.2□□□□□ -1.74
COL9A1P20849 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.19□□□□□ -1.74
COL9A1P20849 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.19□□□□□ -1.74
COL9A1P20849 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.19□□□□□ -1.74
COL9A1P20849 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.19□□□□□ -1.74
COL9A1P20849 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 Y_RNA.299-201ENST00000364973 94 ntBASIC4.19□□□□□ -1.74
COL9A1P20849 SNORD96B-201ENST00000386148 79 ntBASIC4.19□□□□□ -1.74
COL9A1P20849 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
COL9A1P20849 RNU2-37P-201ENST00000410695 177 ntBASIC4.19□□□□□ -1.74
COL9A1P20849 Y_RNA.620-201ENST00000411009 88 ntBASIC4.19□□□□□ -1.74
COL9A1P20849 RNU7-128P-201ENST00000517247 62 ntBASIC4.19□□□□□ -1.74
COL9A1P20849 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.19□□□□□ -1.74
COL9A1P20849 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC4.19□□□□□ -1.74
COL9A1P20849 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC4.19□□□□□ -1.74
COL9A1P20849 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.19□□□□□ -1.74
COL9A1P20849 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms