Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TCL6_2.1-201ENST00000615162 119 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-1336P-201ENST00000383886 109 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 Y_RNA.388-201ENST00000383919 113 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-106P-201ENST00000384405 107 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 MIR489-201ENST00000384923 84 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNORD72-201ENST00000390994 80 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-1197P-201ENST00000391183 107 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL645939.1-201ENST00000453429 797 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU7-115P-201ENST00000516433 55 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-638P-201ENST00000516582 104 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC025166.1-201ENST00000612411 163 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC005562.2-201ENST00000618264 111 ntBASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.23□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 U8.2-201ENST00000363156 134 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-884P-201ENST00000363889 107 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-19P-201ENST00000384718 107 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 MIRLET7F2-201ENST00000385277 83 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 U6atac.2-201ENST00000408644 118 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNA5SP184-201ENST00000411071 108 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU2-55P-201ENST00000411146 174 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 CYCSP48-201ENST00000417124 323 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RPL39P40-201ENST00000445481 146 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC117454.1-201ENST00000491120 168 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 Y_RNA.690-201ENST00000516603 95 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU1-117P-201ENST00000517041 158 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 uc_338.25-201ENST00000613756 156 ntBASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-978P-201ENST00000364371 103 ntBASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 Y_RNA.348-201ENST00000365403 103 ntBASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC004386.2-201ENST00000441858 148 ntBASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-581P-201ENST00000516214 105 ntBASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-781P-201ENST00000516377 101 ntBASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL160236.1-201ENST00000556317 195 ntBASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 Z83843.1-201ENST00000604070 3685 ntBASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 U3.8-201ENST00000363675 217 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 Y_RNA.432-201ENST00000384087 111 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNA5SP496-201ENST00000391240 109 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MIR1278-201ENST00000408753 81 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-554P-201ENST00000410466 106 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU4-47P-201ENST00000410876 114 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 SRIP1-201ENST00000489235 288 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MIR5006-201ENST00000583027 110 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL034555.1-201ENST00000604816 211 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC099778.2-201ENST00000610904 211 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL590808.1-201ENST00000618696 141 ntBASIC4.2□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AP006437.1-201ENST00000641440 3685 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-766P-201ENST00000362478 107 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 SNORD114-7-201ENST00000362520 77 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 Y_RNA.281-201ENST00000364774 94 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MIR518C-201ENST00000384822 101 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 Y_RNA.587-201ENST00000391210 103 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNA5SP504-201ENST00000410676 117 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC004866.1-201ENST00000411748 78 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 TOMM22P1-201ENST00000418578 312 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC027124.2-201ENST00000428249 105 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RPS27AP10-201ENST00000496103 208 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC006445.2-201ENST00000510061 472 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AP003357.1-201ENST00000604497 148 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 PCGEM1.1-201ENST00000613431 131 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 MFSD8-233ENST00000641482 4860 ntBASIC4.19□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU1-75P-201ENST00000347264 129 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RNU6-640P-201ENST00000363693 105 ntBASIC4.18□□□□□ -1.74
SENP3-EIF4A1A0A087X0R7 RN7SKP101-201ENST00000411376 320 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 217.3 ms