Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RNU6-1117P-201ENST00000384525 104 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 MIR518C-201ENST00000384822 101 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 AC016717.1-201ENST00000448918 286 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 BX510359.1-201ENST00000456973 237 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 SNORD65B-201ENST00000459126 73 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 AC117454.1-201ENST00000491120 168 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 AC010598.1-201ENST00000510378 103 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 RNU7-115P-201ENST00000516433 55 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 AC018630.3-201ENST00000542637 96 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 AL391903.3-201ENST00000612158 163 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 MIR548AY-201ENST00000617669 107 ntBASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PTCHD1Q96NR3 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 RNU1-70P-201ENST00000362618 164 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 SNORA38.1-201ENST00000364172 131 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 Y_RNA.229-201ENST00000364347 113 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 RNU6-805P-201ENST00000365643 106 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 MIR218-1-201ENST00000384999 110 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 RPS26P55-201ENST00000471178 356 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 AC021205.2-201ENST00000480069 347 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 RNU6-426P-201ENST00000516464 97 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 AC022616.8-201ENST00000533569 253 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 MIR7515-201ENST00000637837 67 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 AC073346.2-201ENST00000624724 2058 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 Z82209.1-201ENST00000422141 2135 ntBASIC3.07□□□□□ -1.92
PTCHD1Q96NR3 AC058791.1-201ENST00000608412 3198 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 RNU6-407P-201ENST00000365280 104 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 SNORD116-13-201ENST00000384408 92 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 U6atac.2-201ENST00000408644 118 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 SNORA36B-201ENST00000410438 131 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 CST9LP2-201ENST00000437612 320 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 AL121914.1-201ENST00000450188 156 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 AL137159.1-201ENST00000452808 512 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 AC016925.1-201ENST00000458303 298 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 RNU6-948P-201ENST00000516374 107 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 SCARNA3-201ENST00000517097 143 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 AC027419.1-201ENST00000522976 328 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 MIR5680-201ENST00000577577 84 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 MIR3199-1-201ENST00000582434 88 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 MIR7112-201ENST00000616126 65 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 MIR7157-201ENST00000635801 60 ntBASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
PTCHD1Q96NR3 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 RNU6-959P-201ENST00000384671 107 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 RNU6-376P-201ENST00000384731 106 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 MIR569-201ENST00000385228 96 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 MT-TT-201ENST00000387460 66 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 RNU6-383P-201ENST00000410864 94 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 HMGN1P18-201ENST00000457642 277 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 AC090515.1-201ENST00000465295 476 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 RNU6-965P-201ENST00000516721 96 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 RNA5SP380-201ENST00000517190 98 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 MIR548X2-201ENST00000579776 100 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 AC105245.1-201ENST00000581934 244 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 DNAJC19P2-201ENST00000593340 302 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 AP003357.1-201ENST00000604497 148 ntBASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTCHD1Q96NR3 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 AL356292.1-201ENST00000283110 373 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 RNU6-438P-201ENST00000365561 103 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 RNU6-418P-201ENST00000384035 107 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 MIR483-201ENST00000385070 76 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 Y_RNA.586-201ENST00000391146 98 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 AL606845.1-201ENST00000404881 255 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 MTATP6P29-201ENST00000415057 132 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 SEM1P1-201ENST00000506694 209 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 RNA5SP20-201ENST00000515976 84 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 SNORA70.24-201ENST00000517233 118 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 AC025647.1-201ENST00000517879 253 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 MIR5195-201ENST00000583555 115 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 MIR1248-201ENST00000629190 106 ntBASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PTCHD1Q96NR3 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 292.9 ms