Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU7-57P-201ENST00000459540 60 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP490-201ENST00000517141 136 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU2-12P-201ENST00000517216 168 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 AP002001.1-203ENST00000534002 267 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 NDUFA5P6-201ENST00000542110 379 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 AC006380.1-201ENST00000603598 186 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 AL391987.6-201ENST00000305671 199 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.188-201ENST00000363952 111 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.331-201ENST00000365267 102 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.332-201ENST00000365271 113 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-326P-201ENST00000365480 107 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 SNORA25B-201ENST00000365507 128 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 RNU4-30P-201ENST00000410245 143 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 SUMO1P2-201ENST00000452524 304 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 HMGB3P17-201ENST00000504195 649 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-1338P-201ENST00000516328 91 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 AC008749.1-201ENST00000597650 306 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 AC006001.4-201ENST00000622243 395 ntBASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.49□□□□□ -2.01
PTCHD3Q3KNS1 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.14-201ENST00000362415 103 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-454P-201ENST00000364292 107 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.243-201ENST00000364481 109 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.286-201ENST00000364813 102 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.350-201ENST00000365409 98 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-102P-201ENST00000384485 104 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 SNORA53-201ENST00000391141 249 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 SRIP3-201ENST00000413200 219 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 AC123900.1-201ENST00000420390 96 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 AC009238.1-201ENST00000442165 424 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 AC009237.6-201ENST00000446969 424 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 AC107222.1-201ENST00000510899 637 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 MIR4435-1-201ENST00000582552 80 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 MIR3670-2-201ENST00000582974 65 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 MIR5092-201ENST00000583139 88 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 MIR3670-1-201ENST00000584160 65 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 MIR3670-3-201ENST00000584855 65 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 MIR3670-4-201ENST00000612260 65 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 snoZ196.1-201ENST00000625269 89 ntBASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.48□□□□□ -2.01
PTCHD3Q3KNS1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 MTND5P6-201ENST00000422338 1798 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 AC135776.4-201ENST00000624300 1904 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.136-201ENST00000363444 102 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.478-201ENST00000384358 107 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-1235P-201ENST00000384559 107 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-498P-201ENST00000459468 107 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-221P-201ENST00000459541 99 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 RPL39P38-201ENST00000467018 153 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 RNU2-31P-201ENST00000516954 155 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-667P-201ENST00000517186 102 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 AC087441.2-201ENST00000529141 262 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 PRELID2P1-201ENST00000552837 301 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 AC110588.1-201ENST00000559699 137 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 SDR42E1P4-201ENST00000620894 481 ntBASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.47□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.237-201ENST00000364439 102 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 Y_RNA.569-201ENST00000384749 103 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 AL139095.1-201ENST00000404326 391 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 MTCO1P44-201ENST00000441935 243 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 AL357134.1-201ENST00000445848 426 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 AL513328.1-201ENST00000446460 224 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 RN7SL429P-201ENST00000479090 223 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 RN7SL489P-201ENST00000486185 223 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 RN7SL327P-201ENST00000488659 223 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 SERF1AP1-201ENST00000514575 187 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 RNU6-155P-201ENST00000516347 100 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 DEFB108E-201ENST00000524692 240 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 AC005828.6-201ENST00000606610 232 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 AC037487.3-201ENST00000606668 112 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 RN7SL853P-201ENST00000617250 223 ntBASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PTCHD3Q3KNS1 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.45□□□□□ -2.02
PTCHD3Q3KNS1 SNORD114-7-201ENST00000362520 77 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 203 ms