Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC008134.1-201ENST00000420943 193 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 AC010154.1-201ENST00000425857 269 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC43Q96MW1 AL606517.2-201ENST00000442855 241 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 RPL30P7-201ENST00000479312 323 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 RNU6-314P-201ENST00000516574 104 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 RNU1-142P-201ENST00000516682 145 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 RNU6-1198P-201ENST00000516904 67 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 CYP3A52P-201ENST00000563326 91 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC43Q96MW1 MIR4498-201ENST00000577599 66 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 AL929325.1-201ENST00000603096 117 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 AC019193.3-201ENST00000609144 554 ntBASIC1.44□□□□□ -2.18
CCDC43Q96MW1 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC43Q96MW1 SNORD115-32-201ENST00000364079 82 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 Y_RNA.319-201ENST00000365138 92 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 SNORA40.6-201ENST00000391153 128 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC43Q96MW1 ZNF885P-201ENST00000420174 1098 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 SNX2P2-201ENST00000424553 323 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC43Q96MW1 DAP3P1-201ENST00000441522 278 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC43Q96MW1 MTND2P22-201ENST00000444325 1033 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 RNU7-66P-201ENST00000459469 62 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AC004223.1-201ENST00000479840 271 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 ACA59.1-201ENST00000515966 143 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 RNA5SP454-201ENST00000517231 127 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AC024909.2-201ENST00000553035 286 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AC245505.1-201ENST00000556398 224 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AC068338.1-201ENST00000565567 176 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 TPRKBP2-201ENST00000565969 475 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AF250324.2-201ENST00000608299 610 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AC040896.1-201ENST00000613819 479 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC43Q96MW1 U6.108-201ENST00000637764 58 ntBASIC1.43□□□□□ -2.18
CCDC43Q96MW1 Y_RNA.41-201ENST00000362646 102 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 Y_RNA.194-201ENST00000363985 102 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 RNA5SP259-201ENST00000365541 109 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 Y_RNA.517-201ENST00000384551 106 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 MIR153-2-201ENST00000385225 87 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 AC005002.2-201ENST00000438228 269 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 RPS27P1-201ENST00000450552 247 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC43Q96MW1 RNU6-1053P-201ENST00000515930 101 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 RNU6-506P-201ENST00000516553 94 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 AC019288.1-201ENST00000557918 224 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC43Q96MW1 AL359821.1-201ENST00000605519 182 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 AL359075.3-201ENST00000613288 217 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.42□□□□□ -2.18
CCDC43Q96MW1 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC43Q96MW1 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC43Q96MW1 RNA5SP327-201ENST00000362494 101 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 RNU6-727P-201ENST00000363592 107 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 RNU6-873P-201ENST00000363833 107 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 RNU6-1090P-201ENST00000364065 94 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 RNU6-541P-201ENST00000384709 110 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 RPL30P16-201ENST00000419341 429 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC43Q96MW1 SNORA31.10-201ENST00000516482 106 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 SUMO2P16-201ENST00000519475 264 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AP003033.1-201ENST00000527244 415 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AK6P2-201ENST00000549020 471 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AL512310.8-201ENST00000550183 120 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AC027288.2-201ENST00000553028 243 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AC124303.1-201ENST00000605703 360 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 AC009033.1-201ENST00000624279 431 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 MTND4P12-201ENST00000498999 1377 ntBASIC1.41□□□□□ -2.18
CCDC43Q96MW1 Y_RNA.212-201ENST00000364177 102 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 RNU4-75P-201ENST00000364621 146 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 Y_RNA.327-201ENST00000365201 102 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 RNU6-1186P-201ENST00000410429 97 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC43Q96MW1 RPL30P10-201ENST00000488148 337 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 MIR3660-201ENST00000584845 100 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 AC022217.4-201ENST00000604389 163 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 AC021506.2-201ENST00000612354 169 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC43Q96MW1 AC048344.4-201ENST00000619744 527 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 AC009248.2-201ENST00000619826 254 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC43Q96MW1 AC024614.3-201ENST00000637860 256 ntBASIC1.4□□□□□ -2.19
CCDC43Q96MW1 RNU6-1123P-201ENST00000362347 106 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 Y_RNA.135-201ENST00000363439 95 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.39□□□□□ -2.19
CCDC43Q96MW1 SNORD116-11-201ENST00000383882 92 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 Y_RNA.414-201ENST00000384011 101 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 RNU6-950P-201ENST00000384651 107 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 MIR1185-2-201ENST00000408687 86 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC43Q96MW1 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC43Q96MW1 RAB11AP2-201ENST00000545905 639 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 UBL5P4-201ENST00000562584 236 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 FRG2DP-202ENST00000566967 323 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 172.9 ms