Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MTND1P11-201ENST00000456661 876 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 HMGN1P12-201ENST00000499125 195 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 RNU6-344P-201ENST00000516635 111 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AC005668.1-201ENST00000571142 476 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AC006504.8-201ENST00000621046 635 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 snoZ196.1-201ENST00000625269 89 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AL391987.6-201ENST00000305671 199 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 SNORD26-201ENST00000384147 75 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 RNA5SP323-201ENST00000391094 133 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC43Q96MW1 MTND1P1-201ENST00000445453 368 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 RNU1-123P-201ENST00000458950 160 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 AL163195.1-201ENST00000496941 348 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 MTCO2P30-201ENST00000503662 364 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.49□□□□□ -2.17
CCDC43Q96MW1 RNA5SP54-201ENST00000516951 92 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 MTND1P5-201ENST00000517906 940 ntBASIC1.49□□□□□ -2.17
CCDC43Q96MW1 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC43Q96MW1 Y_RNA.38-201ENST00000362617 102 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 MIR515-2-201ENST00000384883 83 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 MIR515-1-201ENST00000384884 83 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 RNA5SP109-201ENST00000391010 116 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AL603825.1-201ENST00000438481 80 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC43Q96MW1 RPS26P45-201ENST00000471748 340 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AC103851.1-201ENST00000506833 274 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AC025647.1-201ENST00000517879 253 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AL442163.3-201ENST00000554110 156 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 MIR4742-201ENST00000581069 85 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 POLR3GP2-201ENST00000588366 668 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AC016727.1-205ENST00000605437 569 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AC103591.3-201ENST00000608684 209 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 AC008873.1-201ENST00000625051 138 ntBASIC1.48□□□□□ -2.17
CCDC43Q96MW1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC43Q96MW1 RNU6-534P-201ENST00000364877 106 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 RNU4-9P-201ENST00000364951 139 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 Y_RNA.559-201ENST00000384686 107 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 RNA5SP504-201ENST00000410676 117 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC43Q96MW1 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC43Q96MW1 RNU7-34P-201ENST00000459394 64 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 HMGN2P26-201ENST00000463169 339 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 MTCYBP18-201ENST00000501056 747 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 RNU6-58P-201ENST00000517143 103 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 AL138726.1-201ENST00000614873 333 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 AL353770.2-201ENST00000620024 78 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
CCDC43Q96MW1 WWP1P1-201ENST00000466609 2769 ntBASIC1.47□□□□□ -2.17
CCDC43Q96MW1 Y_RNA.256-201ENST00000364594 104 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 RNU6-1240P-201ENST00000365155 104 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CCDC43Q96MW1 RNU6-332P-201ENST00000391193 108 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 RPL21P1-201ENST00000399532 476 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC43Q96MW1 EIF1P1-201ENST00000421436 341 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AL445305.1-201ENST00000432577 575 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 MTCO3P18-201ENST00000440206 761 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC43Q96MW1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 SNORA25.14-201ENST00000516481 132 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 RNU6-256P-201ENST00000516747 97 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AC024995.1-201ENST00000523014 93 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AL160236.1-201ENST00000556317 195 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC43Q96MW1 BNIP3P10-201ENST00000605360 577 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 SNORD11B-201ENST00000607707 90 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 AL365434.2-201ENST00000607979 234 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 MIR6078-201ENST00000611069 100 ntBASIC1.46□□□□□ -2.18
CCDC43Q96MW1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC43Q96MW1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.45□□□□□ -2.18
CCDC43Q96MW1 RNU6-451P-201ENST00000362921 107 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 SNORD115-8-201ENST00000363856 82 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 SNORD87-201ENST00000364849 89 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 SNORD115-38-201ENST00000365037 82 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 RNU6-245P-201ENST00000384020 107 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 RNU6-1065P-201ENST00000384513 106 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 Y_RNA.530-201ENST00000384587 101 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 MIR517A-201ENST00000385001 87 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 MIR513A1-201ENST00000385138 129 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 MIR758-201ENST00000390227 88 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
CCDC43Q96MW1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC43Q96MW1 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC43Q96MW1 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC43Q96MW1 AC092473.1-201ENST00000441098 221 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 RNU6-221P-201ENST00000459541 99 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 TRBVA-201ENST00000498804 316 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC43Q96MW1 MIR3672-201ENST00000584290 82 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 MIR1321-201ENST00000637766 79 ntBASIC1.45□□□□□ -2.18
CCDC43Q96MW1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC43Q96MW1 RNY3P3-201ENST00000363816 102 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 194.3 ms