Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 U4.6-201ENST00000621618 127 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 SRP72P2-201ENST00000344851 1979 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 Y_RNA.101-201ENST00000363154 102 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 RNU6-137P-201ENST00000363680 108 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 SNORA72.2-201ENST00000365028 127 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 AL359837.1-201ENST00000381357 287 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 RNU6-381P-201ENST00000391259 108 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 AP000567.1-201ENST00000406413 156 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 Z85995.1-201ENST00000415547 335 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 YPEL5P1-201ENST00000419731 367 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 Y_RNA.637-201ENST00000459424 114 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 RNU1-95P-201ENST00000516357 160 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 SNORA70.18-201ENST00000516696 98 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 RNU1-128P-201ENST00000516704 160 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 AC245166.1-201ENST00000521012 253 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 MIR3921-201ENST00000577308 85 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 AL121772.2-201ENST00000614331 297 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 AL110115.1-201ENST00000614396 364 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 MIR6129-201ENST00000616087 109 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 SCARNA4-202ENST00000625402 129 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.95□□□□□ -1.78
CCDC39Q9UFE4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AL161912.2-201ENST00000565707 3007 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 RNU6-527P-201ENST00000363425 104 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 Y_RNA.172-201ENST00000363765 102 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 RNU6-270P-201ENST00000364131 105 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 RNU6-578P-201ENST00000390980 103 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AC010095.1-201ENST00000443543 144 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 RPS20P22-201ENST00000473700 357 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 RNA5SP290-201ENST00000517133 127 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AC107934.2-201ENST00000518653 310 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 AC011603.4-201ENST00000611325 277 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 SNORA50A-202ENST00000629536 136 ntBASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC39Q9UFE4 RNA5SP295-201ENST00000362655 121 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 RNU6-199P-201ENST00000362954 107 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 RNU6-755P-201ENST00000364400 103 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 RNU6-476P-201ENST00000384726 107 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 RNU6-376P-201ENST00000384731 106 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 MIR1290-201ENST00000408735 78 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 Y_RNA.595-201ENST00000410403 105 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 RNU6-1199P-201ENST00000411249 104 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 DBIP2-201ENST00000419076 262 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 AC009969.1-201ENST00000438726 172 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 AC243964.1-201ENST00000441814 261 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 RAC1P5-201ENST00000512182 576 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 Y_RNA.709-201ENST00000516952 92 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 MIR4744-201ENST00000581563 82 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 DEFB117-201ENST00000602356 141 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 AC027309.3-201ENST00000623419 351 ntBASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC39Q9UFE4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 AL591034.1-201ENST00000407447 340 ntBASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 AC138623.1-201ENST00000418060 216 ntBASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 RNU7-197P-201ENST00000458836 62 ntBASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 RPL23AP67-201ENST00000465341 474 ntBASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 SNORA70.16-201ENST00000516390 95 ntBASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 RNU6-844P-201ENST00000517175 102 ntBASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 SNORA43.4-201ENST00000629559 138 ntBASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
CCDC39Q9UFE4 AC007256.1-201ENST00000392253 2765 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AC002546.1-201ENST00000588041 2504 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 214.5 ms